miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 501 0.68 0.551462
Target:  5'- gGCACGAgcaucagGCGCC-GCCaGA--UCGCGu -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGcCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 542 0.7 0.400006
Target:  5'- cCGC-CGcGCGCCgcGCCGGAuacagCGCGa -3'
miRNA:   3'- -GCGuGCuUGCGGa-CGGCCUuaa--GCGC- -5'
28088 5' -55.4 NC_005887.1 + 817 0.66 0.674281
Target:  5'- gCGCGcCGAGCGCCU-CgCGGAucUUGCc -3'
miRNA:   3'- -GCGU-GCUUGCGGAcG-GCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 990 0.66 0.640987
Target:  5'- uGCuCGAACGCUUcCCGGcggcgCGCGg -3'
miRNA:   3'- gCGuGCUUGCGGAcGGCCuuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 1422 0.68 0.541698
Target:  5'- gGCaagACGAACGCgagCUGCUGGAAggCGUu -3'
miRNA:   3'- gCG---UGCUUGCG---GACGGCCUUaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 1647 0.7 0.438165
Target:  5'- gGCACGAGCGUCgaaGCCGaAAUggucuucaUCGCGc -3'
miRNA:   3'- gCGUGCUUGCGGa--CGGCcUUA--------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1696 0.72 0.322316
Target:  5'- aGCACGAGCGCaagCUGCgCGGcAugcagcucacGUUCGCGu -3'
miRNA:   3'- gCGUGCUUGCG---GACG-GCC-U----------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1808 0.69 0.468112
Target:  5'- uGCGCGAGCGCCaGaCCGucg-UCGCu -3'
miRNA:   3'- gCGUGCUUGCGGaC-GGCcuuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 3888 0.71 0.372815
Target:  5'- gGCAUacGACGCCaUGCCGGAug-UGCGg -3'
miRNA:   3'- gCGUGc-UUGCGG-ACGGCCUuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 4773 0.68 0.529843
Target:  5'- aGCGCGGgaagcugACGCCaGCCGGcGAggccgugcUCGCGg -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGCC-UUa-------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 4887 0.66 0.618732
Target:  5'- uCGCgACGAugguCGCCgaggGCCGGcgcgagguGUUCGUGc -3'
miRNA:   3'- -GCG-UGCUu---GCGGa---CGGCCu-------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 5049 0.66 0.652107
Target:  5'- gGCACGgcaAugGCCgcGCCGGAAgaucagccCGCa -3'
miRNA:   3'- gCGUGC---UugCGGa-CGGCCUUaa------GCGc -5'
28088 5' -55.4 NC_005887.1 + 5136 0.66 0.640987
Target:  5'- gGCAUGAcCGCgCUGCCcGAcgUCgGCGc -3'
miRNA:   3'- gCGUGCUuGCG-GACGGcCUuaAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 5586 0.7 0.428429
Target:  5'- aGCAUGAACGCCU-UUGGAAccugccgCGCGg -3'
miRNA:   3'- gCGUGCUUGCGGAcGGCCUUaa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 5801 1.09 0.00072
Target:  5'- gCGCACGAACGCCUGCCGGAAUUCGCGa -3'
miRNA:   3'- -GCGUGCUUGCGGACGGCCUUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 6402 0.68 0.53522
Target:  5'- gGCACGAGCgacugcgugaucaucGCCgugugGCCGGAcggcCGCGc -3'
miRNA:   3'- gCGUGCUUG---------------CGGa----CGGCCUuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 9615 0.68 0.530917
Target:  5'- gCGCacGCGAGCGCCgcgcuaccccGCCGuGggUgaaccgCGCGg -3'
miRNA:   3'- -GCG--UGCUUGCGGa---------CGGC-CuuAa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 9817 0.67 0.596525
Target:  5'- gGCccGCGAACGCgUcgcaGCCGGucagCGCGg -3'
miRNA:   3'- gCG--UGCUUGCGgA----CGGCCuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 10702 0.67 0.607618
Target:  5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3'
miRNA:   3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5'
28088 5' -55.4 NC_005887.1 + 11319 0.66 0.649884
Target:  5'- gGCAgCGAGCGCCgcaaccgcgacgGCCGGua--CGCu -3'
miRNA:   3'- gCGU-GCUUGCGGa-----------CGGCCuuaaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.