miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 37406 0.67 0.574441
Target:  5'- uGCGCGGucgcgACuGCCUGCacgccaggugCGGAGUggagCGCGg -3'
miRNA:   3'- gCGUGCU-----UG-CGGACG----------GCCUUAa---GCGC- -5'
28088 5' -55.4 NC_005887.1 + 39982 0.69 0.488649
Target:  5'- aGgGCGAGaCGCCgugGCCcgacaugcaGGAcgUCGCGg -3'
miRNA:   3'- gCgUGCUU-GCGGa--CGG---------CCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 17182 0.69 0.488649
Target:  5'- gCGCGCGAACGCg-GCCGca---CGCGg -3'
miRNA:   3'- -GCGUGCUUGCGgaCGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 28369 0.68 0.499076
Target:  5'- aGCACGAACGCgUcGaCGGc-UUCGCGg -3'
miRNA:   3'- gCGUGCUUGCGgA-CgGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 12905 0.68 0.5096
Target:  5'- gGCACGGcgaGCCagcacGCCGGu-UUCGCGa -3'
miRNA:   3'- gCGUGCUug-CGGa----CGGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 30255 0.68 0.5096
Target:  5'- aCGUACaGGCGCUUGCCGuccggCGCGa -3'
miRNA:   3'- -GCGUGcUUGCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 4773 0.68 0.529843
Target:  5'- aGCGCGGgaagcugACGCCaGCCGGcGAggccgugcUCGCGg -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGCC-UUa-------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1422 0.68 0.541698
Target:  5'- gGCaagACGAACGCgagCUGCUGGAAggCGUu -3'
miRNA:   3'- gCG---UGCUUGCG---GACGGCCUUaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 25893 0.67 0.560186
Target:  5'- cCGCuCGAACGCUUGCCGaucuucacgagcguGAGcuugccgUCGCGc -3'
miRNA:   3'- -GCGuGCUUGCGGACGGC--------------CUUa------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 39802 0.69 0.458011
Target:  5'- gCGCGCGucgucacuuCGCaCUGCUGGAuaaagCGCGa -3'
miRNA:   3'- -GCGUGCuu-------GCG-GACGGCCUuaa--GCGC- -5'
28088 5' -55.4 NC_005887.1 + 41287 0.69 0.448027
Target:  5'- gCGCACGGGCGCgCUGCUgccgccgggcaaGGAAcacCGCa -3'
miRNA:   3'- -GCGUGCUUGCG-GACGG------------CCUUaa-GCGc -5'
28088 5' -55.4 NC_005887.1 + 1647 0.7 0.438165
Target:  5'- gGCACGAGCGUCgaaGCCGaAAUggucuucaUCGCGc -3'
miRNA:   3'- gCGUGCUUGCGGa--CGGCcUUA--------AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 1696 0.72 0.322316
Target:  5'- aGCACGAGCGCaagCUGCgCGGcAugcagcucacGUUCGCGu -3'
miRNA:   3'- gCGUGCUUGCG---GACG-GCC-U----------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 35682 0.72 0.330367
Target:  5'- gCGCGCGAuCGgCgGCCGGc-UUCGCGg -3'
miRNA:   3'- -GCGUGCUuGCgGaCGGCCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 26835 0.72 0.338565
Target:  5'- uGCGCGAgcgggcGCGUCUGCCGGuagccgUUGCc -3'
miRNA:   3'- gCGUGCU------UGCGGACGGCCuua---AGCGc -5'
28088 5' -55.4 NC_005887.1 + 3888 0.71 0.372815
Target:  5'- gGCAUacGACGCCaUGCCGGAug-UGCGg -3'
miRNA:   3'- gCGUGc-UUGCGG-ACGGCCUuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 15609 0.7 0.398154
Target:  5'- gCGCACGGGCGUCgcgcagcaggcgGCCGGGc-UCGCc -3'
miRNA:   3'- -GCGUGCUUGCGGa-----------CGGCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 542 0.7 0.400006
Target:  5'- cCGC-CGcGCGCCgcGCCGGAuacagCGCGa -3'
miRNA:   3'- -GCGuGCuUGCGGa-CGGCCUuaa--GCGC- -5'
28088 5' -55.4 NC_005887.1 + 11374 0.7 0.418822
Target:  5'- aGCGCGGGCGUCagcgcaGCCGGAg--CGCu -3'
miRNA:   3'- gCGUGCUUGCGGa-----CGGCCUuaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 40773 0.7 0.437186
Target:  5'- cCGCGCGc-CGCCgaGCCGGcggucgaGGUUCGUGg -3'
miRNA:   3'- -GCGUGCuuGCGGa-CGGCC-------UUAAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.