miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 817 0.66 0.674281
Target:  5'- gCGCGcCGAGCGCCU-CgCGGAucUUGCc -3'
miRNA:   3'- -GCGU-GCUUGCGGAcG-GCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 28454 0.68 0.541698
Target:  5'- uGcCACGAAUGCCgacgcgcacgaGCCGGuAGcUCGCGa -3'
miRNA:   3'- gC-GUGCUUGCGGa----------CGGCC-UUaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 9615 0.68 0.530917
Target:  5'- gCGCacGCGAGCGCCgcgcuaccccGCCGuGggUgaaccgCGCGg -3'
miRNA:   3'- -GCG--UGCUUGCGGa---------CGGC-CuuAa-----GCGC- -5'
28088 5' -55.4 NC_005887.1 + 5801 1.09 0.00072
Target:  5'- gCGCACGAACGCCUGCCGGAAUUCGCGa -3'
miRNA:   3'- -GCGUGCUUGCGGACGGCCUUAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 24758 0.66 0.652107
Target:  5'- gCGCGCGAGCGCgggaUUGaCGGGcguGUUCGUc -3'
miRNA:   3'- -GCGUGCUUGCG----GACgGCCU---UAAGCGc -5'
28088 5' -55.4 NC_005887.1 + 990 0.66 0.640987
Target:  5'- uGCuCGAACGCUUcCCGGcggcgCGCGg -3'
miRNA:   3'- gCGuGCUUGCGGAcGGCCuuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 26114 0.67 0.607618
Target:  5'- cCGUGCGcuCGCCgGCCGGcGUaucgaUCGUGa -3'
miRNA:   3'- -GCGUGCuuGCGGaCGGCCuUA-----AGCGC- -5'
28088 5' -55.4 NC_005887.1 + 10702 0.67 0.607618
Target:  5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3'
miRNA:   3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5'
28088 5' -55.4 NC_005887.1 + 38779 0.67 0.574441
Target:  5'- uGCACGuGCGUCUugucgaucagGCCGGAAUuguucUCgGCGa -3'
miRNA:   3'- gCGUGCuUGCGGA----------CGGCCUUA-----AG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 501 0.68 0.551462
Target:  5'- gGCACGAgcaucagGCGCC-GCCaGA--UCGCGu -3'
miRNA:   3'- gCGUGCU-------UGCGGaCGGcCUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 37445 0.67 0.563467
Target:  5'- gCGCACGAACaCCUcgcGCCGGcccUCgGCGa -3'
miRNA:   3'- -GCGUGCUUGcGGA---CGGCCuuaAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 37861 0.67 0.596525
Target:  5'- aCGCGCGAugcgcGCGCCguUCGGcaccUUCGCGg -3'
miRNA:   3'- -GCGUGCU-----UGCGGacGGCCuu--AAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 21195 0.66 0.674281
Target:  5'- gGCAuCGAaaACGCC-GUCGGAuuggcacuagcAUUCGUGg -3'
miRNA:   3'- gCGU-GCU--UGCGGaCGGCCU-----------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 29050 0.68 0.55255
Target:  5'- uGC-CGAACGCCUGgCCGaucuGGUUCaGCGc -3'
miRNA:   3'- gCGuGCUUGCGGAC-GGCc---UUAAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 30871 0.66 0.663208
Target:  5'- uGCGCGuagaccUGCuCUGCCuGAuuGUUCGCGa -3'
miRNA:   3'- gCGUGCuu----GCG-GACGGcCU--UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 30755 0.67 0.607618
Target:  5'- gCGUGuCGAGCGCCgauCCGGuGUUCGgGu -3'
miRNA:   3'- -GCGU-GCUUGCGGac-GGCCuUAAGCgC- -5'
28088 5' -55.4 NC_005887.1 + 24933 0.68 0.55255
Target:  5'- aGCGCGAuguucuuCGCCUGCCGccga-CGUGa -3'
miRNA:   3'- gCGUGCUu------GCGGACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 6402 0.68 0.53522
Target:  5'- gGCACGAGCgacugcgugaucaucGCCgugugGCCGGAcggcCGCGc -3'
miRNA:   3'- gCGUGCUUG---------------CGGa----CGGCCUuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 24207 0.66 0.658771
Target:  5'- gGCACGAcgucggcggcccGCGCUUcGCCGGuugcguacagCGCGu -3'
miRNA:   3'- gCGUGCU------------UGCGGA-CGGCCuuaa------GCGC- -5'
28088 5' -55.4 NC_005887.1 + 32506 0.66 0.62652
Target:  5'- gCGCGCGGcguucagguuggccGCGCUgaccgGCUGcGAcgcGUUCGCGg -3'
miRNA:   3'- -GCGUGCU--------------UGCGGa----CGGC-CU---UAAGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.