Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28088 | 5' | -55.4 | NC_005887.1 | + | 817 | 0.66 | 0.674281 |
Target: 5'- gCGCGcCGAGCGCCU-CgCGGAucUUGCc -3' miRNA: 3'- -GCGU-GCUUGCGGAcG-GCCUuaAGCGc -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 28454 | 0.68 | 0.541698 |
Target: 5'- uGcCACGAAUGCCgacgcgcacgaGCCGGuAGcUCGCGa -3' miRNA: 3'- gC-GUGCUUGCGGa----------CGGCC-UUaAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 9615 | 0.68 | 0.530917 |
Target: 5'- gCGCacGCGAGCGCCgcgcuaccccGCCGuGggUgaaccgCGCGg -3' miRNA: 3'- -GCG--UGCUUGCGGa---------CGGC-CuuAa-----GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 5801 | 1.09 | 0.00072 |
Target: 5'- gCGCACGAACGCCUGCCGGAAUUCGCGa -3' miRNA: 3'- -GCGUGCUUGCGGACGGCCUUAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 24758 | 0.66 | 0.652107 |
Target: 5'- gCGCGCGAGCGCgggaUUGaCGGGcguGUUCGUc -3' miRNA: 3'- -GCGUGCUUGCG----GACgGCCU---UAAGCGc -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 990 | 0.66 | 0.640987 |
Target: 5'- uGCuCGAACGCUUcCCGGcggcgCGCGg -3' miRNA: 3'- gCGuGCUUGCGGAcGGCCuuaa-GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 26114 | 0.67 | 0.607618 |
Target: 5'- cCGUGCGcuCGCCgGCCGGcGUaucgaUCGUGa -3' miRNA: 3'- -GCGUGCuuGCGGaCGGCCuUA-----AGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 10702 | 0.67 | 0.607618 |
Target: 5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3' miRNA: 3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 38779 | 0.67 | 0.574441 |
Target: 5'- uGCACGuGCGUCUugucgaucagGCCGGAAUuguucUCgGCGa -3' miRNA: 3'- gCGUGCuUGCGGA----------CGGCCUUA-----AG-CGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 501 | 0.68 | 0.551462 |
Target: 5'- gGCACGAgcaucagGCGCC-GCCaGA--UCGCGu -3' miRNA: 3'- gCGUGCU-------UGCGGaCGGcCUuaAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 37445 | 0.67 | 0.563467 |
Target: 5'- gCGCACGAACaCCUcgcGCCGGcccUCgGCGa -3' miRNA: 3'- -GCGUGCUUGcGGA---CGGCCuuaAG-CGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 37861 | 0.67 | 0.596525 |
Target: 5'- aCGCGCGAugcgcGCGCCguUCGGcaccUUCGCGg -3' miRNA: 3'- -GCGUGCU-----UGCGGacGGCCuu--AAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 21195 | 0.66 | 0.674281 |
Target: 5'- gGCAuCGAaaACGCC-GUCGGAuuggcacuagcAUUCGUGg -3' miRNA: 3'- gCGU-GCU--UGCGGaCGGCCU-----------UAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 29050 | 0.68 | 0.55255 |
Target: 5'- uGC-CGAACGCCUGgCCGaucuGGUUCaGCGc -3' miRNA: 3'- gCGuGCUUGCGGAC-GGCc---UUAAG-CGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 30871 | 0.66 | 0.663208 |
Target: 5'- uGCGCGuagaccUGCuCUGCCuGAuuGUUCGCGa -3' miRNA: 3'- gCGUGCuu----GCG-GACGGcCU--UAAGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 30755 | 0.67 | 0.607618 |
Target: 5'- gCGUGuCGAGCGCCgauCCGGuGUUCGgGu -3' miRNA: 3'- -GCGU-GCUUGCGGac-GGCCuUAAGCgC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 24933 | 0.68 | 0.55255 |
Target: 5'- aGCGCGAuguucuuCGCCUGCCGccga-CGUGa -3' miRNA: 3'- gCGUGCUu------GCGGACGGCcuuaaGCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 6402 | 0.68 | 0.53522 |
Target: 5'- gGCACGAGCgacugcgugaucaucGCCgugugGCCGGAcggcCGCGc -3' miRNA: 3'- gCGUGCUUG---------------CGGa----CGGCCUuaa-GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 24207 | 0.66 | 0.658771 |
Target: 5'- gGCACGAcgucggcggcccGCGCUUcGCCGGuugcguacagCGCGu -3' miRNA: 3'- gCGUGCU------------UGCGGA-CGGCCuuaa------GCGC- -5' |
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28088 | 5' | -55.4 | NC_005887.1 | + | 32506 | 0.66 | 0.62652 |
Target: 5'- gCGCGCGGcguucagguuggccGCGCUgaccgGCUGcGAcgcGUUCGCGg -3' miRNA: 3'- -GCGUGCU--------------UGCGGa----CGGC-CU---UAAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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