miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 17412 0.66 0.507303
Target:  5'- aCGUCggcGGCAuggcgaagaacAUCGCGCUcgucgagCGCUACGGCc -3'
miRNA:   3'- -GCGGa--UUGU-----------UGGCGCGG-------GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26524 0.66 0.505218
Target:  5'- gCGCCUGcaguuucaggucguGCAcCuCGUGCCaCGgUGCGGUg -3'
miRNA:   3'- -GCGGAU--------------UGUuG-GCGCGG-GCgAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3342 0.66 0.497951
Target:  5'- uGCgCUGAacgaGAUCGCGUCCGUcaaGGCg -3'
miRNA:   3'- gCG-GAUUg---UUGGCGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 17741 0.66 0.497951
Target:  5'- aCGCUcGGCAcgGCCGCG-CgGCUgAUGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCgGgCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33935 0.67 0.487652
Target:  5'- uCGaCCUGcCGACgGCGCUcggcgagcacguCGCgUGCGGCg -3'
miRNA:   3'- -GC-GGAUuGUUGgCGCGG------------GCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12945 0.67 0.487652
Target:  5'- uGCCgcaGCAaGCCGCGa-CGCUACaGCa -3'
miRNA:   3'- gCGGau-UGU-UGGCGCggGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 25482 0.67 0.487652
Target:  5'- uGCCUGuCGAgC-CGUCCGCgccGCGGUa -3'
miRNA:   3'- gCGGAUuGUUgGcGCGGGCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 322 0.67 0.487652
Target:  5'- cCGCCUuguACGcAUCGCGCgCCGCgGCGa- -3'
miRNA:   3'- -GCGGAu--UGU-UGGCGCG-GGCGaUGCcg -5'
28090 5' -57.5 NC_005887.1 + 41529 0.67 0.487652
Target:  5'- gGCC--GCGAUCGCGCgaGC-AUGGCu -3'
miRNA:   3'- gCGGauUGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35856 0.67 0.486627
Target:  5'- uCGCCUGcggauugcgcucgGCAgacaccgcgacGCCGCGCCCGUacuucaGGUc -3'
miRNA:   3'- -GCGGAU-------------UGU-----------UGGCGCGGGCGaug---CCG- -5'
28090 5' -57.5 NC_005887.1 + 12528 0.67 0.484581
Target:  5'- aCGCCUcuGGC-GCCGCGCacacccgcagacuuCCaGCUACuGGCc -3'
miRNA:   3'- -GCGGA--UUGuUGGCGCG--------------GG-CGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 1581 0.67 0.477453
Target:  5'- cCGCCggcucGGCGGCgCGCGgCgCGCcaACGGCg -3'
miRNA:   3'- -GCGGa----UUGUUG-GCGCgG-GCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29417 0.67 0.477453
Target:  5'- gGCUUGcuGCGGCagggaCGCGCUCGCgaaacCGGCg -3'
miRNA:   3'- gCGGAU--UGUUG-----GCGCGGGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 36451 0.67 0.477453
Target:  5'- uGCCcuuCGGCCa-GCCCGCaGCGGUc -3'
miRNA:   3'- gCGGauuGUUGGcgCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13578 0.67 0.477453
Target:  5'- gGCCgacGACGcgaaggagGCCGCGUacuucaUCGCUGCuGGCa -3'
miRNA:   3'- gCGGa--UUGU--------UGGCGCG------GGCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 23419 0.67 0.473404
Target:  5'- cCGCC-GACGGCCGCuGCgagauucggugagCGCUGCGGg -3'
miRNA:   3'- -GCGGaUUGUUGGCG-CGg------------GCGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 18084 0.67 0.467362
Target:  5'- uCGCgCUAuccgGCGacucGCCGUGgCUGCUGcCGGCa -3'
miRNA:   3'- -GCG-GAU----UGU----UGGCGCgGGCGAU-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 26741 0.67 0.467362
Target:  5'- cCGCCUGcuGCGcgacgcccgugcGCUGCGUCUcaGCUuCGGCg -3'
miRNA:   3'- -GCGGAU--UGU------------UGGCGCGGG--CGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3394 0.67 0.467362
Target:  5'- aCGCUguuc-GCCGCGCgcuaCCGCUggcaggGCGGCu -3'
miRNA:   3'- -GCGGauuguUGGCGCG----GGCGA------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26903 0.67 0.467362
Target:  5'- uGCCgagaAGCUGCGCCCGagucGCuGGCc -3'
miRNA:   3'- gCGGauugUUGGCGCGGGCga--UG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.