miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 9733 0.66 0.529405
Target:  5'- aCGCCcGGCAGCUGaacaaGCuuGCguggAUGGUg -3'
miRNA:   3'- -GCGGaUUGUUGGCg----CGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26415 0.66 0.529405
Target:  5'- uCGagCUGGCGGCCGCGCgggaacgcgCGCUGCaGCc -3'
miRNA:   3'- -GCg-GAUUGUUGGCGCGg--------GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 25053 0.66 0.529405
Target:  5'- gCGCCg---AACCgGCGUuuGCgcgcGCGGCg -3'
miRNA:   3'- -GCGGauugUUGG-CGCGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2350 0.66 0.529405
Target:  5'- gGCg-GGCGACCaGCGCUCGCa--GGCc -3'
miRNA:   3'- gCGgaUUGUUGG-CGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 15373 0.66 0.528344
Target:  5'- aCGCCcgAGCAggucgacGCCGCGCUgauCGCgcGCGGg -3'
miRNA:   3'- -GCGGa-UUGU-------UGGCGCGG---GCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 25855 0.66 0.525167
Target:  5'- gGCCUgcGACAucGCCGaccaGCCCGCcggauccugccgcGCGGUc -3'
miRNA:   3'- gCGGA--UUGU--UGGCg---CGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7442 0.66 0.518834
Target:  5'- gGCgCUGGCGugCGCGUC-GUgauCGGCa -3'
miRNA:   3'- gCG-GAUUGUugGCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 11310 0.66 0.518834
Target:  5'- gGCCggcucGGCAGCgaGCGCcgcaaCCGCgACGGCc -3'
miRNA:   3'- gCGGa----UUGUUGg-CGCG-----GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31826 0.66 0.518834
Target:  5'- uGCCcuucuuGCcGCCGC-CCCGUuccgaaUACGGCu -3'
miRNA:   3'- gCGGau----UGuUGGCGcGGGCG------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2423 0.66 0.518834
Target:  5'- gCGUCgu-CGA-CGCGCCCGgCUcgaucugcGCGGCa -3'
miRNA:   3'- -GCGGauuGUUgGCGCGGGC-GA--------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28316 0.66 0.518834
Target:  5'- uCGUCUca-GGCUGCGCCgGCggcgcgcCGGCg -3'
miRNA:   3'- -GCGGAuugUUGGCGCGGgCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 23229 0.66 0.518834
Target:  5'- aCGCC-GACGGCaCGCGa--GCgGCGGCg -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCgggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29461 0.66 0.518834
Target:  5'- uCGCCgu---GCCGaucaGCUCGCgcACGGCa -3'
miRNA:   3'- -GCGGauuguUGGCg---CGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29920 0.66 0.518834
Target:  5'- gGUCcaucGCGAUCGCGCgCGC-GCGGUg -3'
miRNA:   3'- gCGGau--UGUUGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7382 0.66 0.514629
Target:  5'- uCGCCUucaucAACAACCugcgcaCGCCCGCcgaguucgaagcCGGCg -3'
miRNA:   3'- -GCGGA-----UUGUUGGc-----GCGGGCGau----------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 17389 0.66 0.508347
Target:  5'- -cCCUcGCGGCCGCGCgCaagGCGGCc -3'
miRNA:   3'- gcGGAuUGUUGGCGCGgGcgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35950 0.66 0.508347
Target:  5'- gCGCCUugucGACuuCCGCGUaCGCUuCGaGCa -3'
miRNA:   3'- -GCGGA----UUGuuGGCGCGgGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 10080 0.66 0.508347
Target:  5'- aGCC--GCAuuCCGUcgugugggcgGCCCGCgccgACGGCc -3'
miRNA:   3'- gCGGauUGUu-GGCG----------CGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26070 0.66 0.508347
Target:  5'- -uCCUGGuCAGCgCGUcagcgGCCCGC-GCGGCg -3'
miRNA:   3'- gcGGAUU-GUUG-GCG-----CGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 37445 0.66 0.508347
Target:  5'- gCGCacgAACAcCuCGCGCCgGCccuCGGCg -3'
miRNA:   3'- -GCGga-UUGUuG-GCGCGGgCGau-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.