miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 28328 0.73 0.209209
Target:  5'- aGCCUGuugucgGCGuCUGCGCCgGC-GCGGCa -3'
miRNA:   3'- gCGGAU------UGUuGGCGCGGgCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13369 0.73 0.212563
Target:  5'- aGCCcGGCGAUgGCGCUCGCgcugaaggccggcGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGgCGCGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12955 0.73 0.214825
Target:  5'- aGCCUGaucGCGACCGCGC-CGC-AUGGg -3'
miRNA:   3'- gCGGAU---UGUUGGCGCGgGCGaUGCCg -5'
28090 5' -57.5 NC_005887.1 + 40126 0.73 0.214825
Target:  5'- aCGCCUAcaGCGugCgGUGCgCGCUGCGcGCc -3'
miRNA:   3'- -GCGGAU--UGUugG-CGCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 3722 0.73 0.214825
Target:  5'- gCGCCgaccGCGAuCCGCGCaaGCUggACGGCc -3'
miRNA:   3'- -GCGGau--UGUU-GGCGCGggCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12607 0.72 0.22057
Target:  5'- uCGCCgGGCAagACCGUGCaCGC-GCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38140 0.72 0.22057
Target:  5'- aCGCCUuuCucCUGCGCgCGCUGCaGCa -3'
miRNA:   3'- -GCGGAuuGuuGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 39437 0.72 0.226446
Target:  5'- aGCUUGGCGGCgGCGUcguUCGCgGCGGCc -3'
miRNA:   3'- gCGGAUUGUUGgCGCG---GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27079 0.72 0.226446
Target:  5'- uCGCCggcgGACGcucGCCGCGCagCaCUGCGGCu -3'
miRNA:   3'- -GCGGa---UUGU---UGGCGCGg-GcGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 24612 0.72 0.226446
Target:  5'- aGCCgcGCGGCCGUGCCgaGCgucuugaagaACGGCa -3'
miRNA:   3'- gCGGauUGUUGGCGCGGg-CGa---------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7640 0.72 0.233062
Target:  5'- uCGCCgcgcaccgcaagcgcGACGACgGcCGCCCGCUGCuGCu -3'
miRNA:   3'- -GCGGa--------------UUGUUGgC-GCGGGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 3168 0.72 0.244238
Target:  5'- gCGCCUcGACAaguucgggcagcuGCCGCGCCCGg-ACaGCg -3'
miRNA:   3'- -GCGGA-UUGU-------------UGGCGCGGGCgaUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 14522 0.72 0.244872
Target:  5'- cCGCUU-GCAGgCGCGgCCGUcgGCGGCg -3'
miRNA:   3'- -GCGGAuUGUUgGCGCgGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5421 0.72 0.244872
Target:  5'- gCGCCgcaGCGACCGgcgcgaccacgcCGCCCGCU--GGCa -3'
miRNA:   3'- -GCGGau-UGUUGGC------------GCGGGCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 14636 0.72 0.251285
Target:  5'- gGCCUGACcGCCGuCGagUGCUacGCGGCg -3'
miRNA:   3'- gCGGAUUGuUGGC-GCggGCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30788 0.72 0.251285
Target:  5'- aGCCcgauuccGCGACCGcCGCgCGCUGCGcGCc -3'
miRNA:   3'- gCGGau-----UGUUGGC-GCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 5809 0.72 0.251285
Target:  5'- aCGCCUGccggaauucGCGaaauaccuGCCGcCGCCCgauGCUGCGGUc -3'
miRNA:   3'- -GCGGAU---------UGU--------UGGC-GCGGG---CGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27787 0.72 0.251285
Target:  5'- gCGCCaUGACGACgGCGCCgaCGCa--GGCg -3'
miRNA:   3'- -GCGG-AUUGUUGgCGCGG--GCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 14059 0.71 0.257836
Target:  5'- uCGCCacGAC-GCUGCGCgCGCU-CGGCg -3'
miRNA:   3'- -GCGGa-UUGuUGGCGCGgGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 36451 0.71 0.257836
Target:  5'- uCGCCUGGCGACCGaGCUCGaCguucCGGUc -3'
miRNA:   3'- -GCGGAUUGUUGGCgCGGGC-Gau--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.