miRNA display CGI


Results 21 - 40 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 4492 1.12 0.000264
Target:  5'- cCGCCUAACAACCGCGCCCGCUACGGCg -3'
miRNA:   3'- -GCGGAUUGUUGGCGCGGGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4585 0.69 0.359318
Target:  5'- cCGCCgagGCGcagGCCGCGCagaugcaacagaugcUCGCcGCGGCg -3'
miRNA:   3'- -GCGGau-UGU---UGGCGCG---------------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4792 0.66 0.540054
Target:  5'- aGCCggcgaGGCCGUGCUCGCggaucuCGcGCa -3'
miRNA:   3'- gCGGauug-UUGGCGCGGGCGau----GC-CG- -5'
28090 5' -57.5 NC_005887.1 + 5149 0.68 0.417707
Target:  5'- uGCCcGACGuCgGCGCgCCGCUgaugcugAUGGCa -3'
miRNA:   3'- gCGGaUUGUuGgCGCG-GGCGA-------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5246 0.73 0.208654
Target:  5'- gGCCgcGCGAUCGCcgaggcugugcucGCCCGCUuCGGUg -3'
miRNA:   3'- gCGGauUGUUGGCG-------------CGGGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5421 0.72 0.244872
Target:  5'- gCGCCgcaGCGACCGgcgcgaccacgcCGCCCGCU--GGCa -3'
miRNA:   3'- -GCGGau-UGUUGGC------------GCGGGCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 5809 0.72 0.251285
Target:  5'- aCGCCUGccggaauucGCGaaauaccuGCCGcCGCCCgauGCUGCGGUc -3'
miRNA:   3'- -GCGGAU---------UGU--------UGGC-GCGGG---CGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5913 0.66 0.540054
Target:  5'- gGCCgaagGGCAagaaGCCG-GCCgCGCggaagGCGGUg -3'
miRNA:   3'- gCGGa---UUGU----UGGCgCGG-GCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 6433 0.69 0.355915
Target:  5'- gGCCgGACGGCCGCGCCgagaucgaagugCGCgaccugaagUACGGg -3'
miRNA:   3'- gCGGaUUGUUGGCGCGG------------GCG---------AUGCCg -5'
28090 5' -57.5 NC_005887.1 + 6626 0.66 0.529405
Target:  5'- gGCC--ACGACCGCGaCCgaGCUGCacGCg -3'
miRNA:   3'- gCGGauUGUUGGCGC-GGg-CGAUGc-CG- -5'
28090 5' -57.5 NC_005887.1 + 7115 0.7 0.315324
Target:  5'- gGUCUAACGagGCgGgGCggCGCUGCGGCg -3'
miRNA:   3'- gCGGAUUGU--UGgCgCGg-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7203 0.67 0.457381
Target:  5'- aGCgUGACGGCCGCccGUCCGU---GGCg -3'
miRNA:   3'- gCGgAUUGUUGGCG--CGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 7265 0.76 0.128024
Target:  5'- cCGCCcgaaGACGACuucgaaguCGCGCCCGCcgacgACGGCa -3'
miRNA:   3'- -GCGGa---UUGUUG--------GCGCGGGCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7382 0.66 0.514629
Target:  5'- uCGCCUucaucAACAACCugcgcaCGCCCGCcgaguucgaagcCGGCg -3'
miRNA:   3'- -GCGGA-----UUGUUGGc-----GCGGGCGau----------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 7442 0.66 0.518834
Target:  5'- gGCgCUGGCGugCGCGUC-GUgauCGGCa -3'
miRNA:   3'- gCG-GAUUGUugGCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 7640 0.72 0.233062
Target:  5'- uCGCCgcgcaccgcaagcgcGACGACgGcCGCCCGCUGCuGCu -3'
miRNA:   3'- -GCGGa--------------UUGUUGgC-GCGGGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 7808 0.68 0.428147
Target:  5'- aCGCgCaGACGAagacgaacCCGgGCauCCGCUGCGGCc -3'
miRNA:   3'- -GCG-GaUUGUU--------GGCgCG--GGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 8003 0.68 0.400046
Target:  5'- uCGUCUc-CAGCCGUgGCCgGCgccACGGCa -3'
miRNA:   3'- -GCGGAuuGUUGGCG-CGGgCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 8096 0.69 0.34751
Target:  5'- gCGCgCgcGCAgcucGCCGCGCUCGCcgaGGCg -3'
miRNA:   3'- -GCG-GauUGU----UGGCGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 8538 0.66 0.549699
Target:  5'- cCGaCCUGACAcCCGCGUgguggccguggguCCGCgcuUGGUg -3'
miRNA:   3'- -GC-GGAUUGUuGGCGCG-------------GGCGau-GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.