miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 322 0.67 0.487652
Target:  5'- cCGCCUuguACGcAUCGCGCgCCGCgGCGa- -3'
miRNA:   3'- -GCGGAu--UGU-UGGCGCG-GGCGaUGCcg -5'
28090 5' -57.5 NC_005887.1 + 406 0.69 0.364463
Target:  5'- gCGCCgcgaaGACGcGCCGCgccGCCCGCUGuuGCu -3'
miRNA:   3'- -GCGGa----UUGU-UGGCG---CGGGCGAUgcCG- -5'
28090 5' -57.5 NC_005887.1 + 542 0.68 0.43777
Target:  5'- cCGCCgcGC-GCCGCGCCgGaUACaGCg -3'
miRNA:   3'- -GCGGauUGuUGGCGCGGgCgAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 1059 0.73 0.198355
Target:  5'- uGCCcGGCGGCagcagCGCGCCCGUgcgcaggucgACGGCg -3'
miRNA:   3'- gCGGaUUGUUG-----GCGCGGGCGa---------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1480 0.75 0.151196
Target:  5'- aCGCCgacGGCGugCgGCGCUCGC-GCGGCg -3'
miRNA:   3'- -GCGGa--UUGUugG-CGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1581 0.67 0.477453
Target:  5'- cCGCCggcucGGCGGCgCGCGgCgCGCcaACGGCg -3'
miRNA:   3'- -GCGGa----UUGUUG-GCGCgG-GCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1994 0.69 0.381978
Target:  5'- aCGgCggcACGGCCGCGCUCG--ACGGCc -3'
miRNA:   3'- -GCgGau-UGUUGGCGCGGGCgaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2350 0.66 0.529405
Target:  5'- gGCg-GGCGACCaGCGCUCGCa--GGCc -3'
miRNA:   3'- gCGgaUUGUUGG-CGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 2423 0.66 0.518834
Target:  5'- gCGUCgu-CGA-CGCGCCCGgCUcgaucugcGCGGCa -3'
miRNA:   3'- -GCGGauuGUUgGCGCGGGC-GA--------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2432 0.7 0.307637
Target:  5'- gCGCCgacgaaUGAC-ACCuCGCUgCGCUACGGCg -3'
miRNA:   3'- -GCGG------AUUGuUGGcGCGG-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2926 0.71 0.264526
Target:  5'- cCGCCgccaAGCUGCGCaagCGCcGCGGCa -3'
miRNA:   3'- -GCGGauugUUGGCGCGg--GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3011 0.69 0.346678
Target:  5'- gCGCCUG-CGGCCaGCGCCgcgggcaaagccaUGCU-CGGCc -3'
miRNA:   3'- -GCGGAUuGUUGG-CGCGG-------------GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3168 0.72 0.244238
Target:  5'- gCGCCUcGACAaguucgggcagcuGCCGCGCCCGg-ACaGCg -3'
miRNA:   3'- -GCGGA-UUGU-------------UGGCGCGGGCgaUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 3342 0.66 0.497951
Target:  5'- uGCgCUGAacgaGAUCGCGUCCGUcaaGGCg -3'
miRNA:   3'- gCG-GAUUg---UUGGCGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 3394 0.67 0.467362
Target:  5'- aCGCUguuc-GCCGCGCgcuaCCGCUggcaggGCGGCu -3'
miRNA:   3'- -GCGGauuguUGGCGCG----GGCGA------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3612 0.7 0.292695
Target:  5'- gCGCCa---GGCCGCGCagCGCUuCGGCc -3'
miRNA:   3'- -GCGGauugUUGGCGCGg-GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3722 0.73 0.214825
Target:  5'- gCGCCgaccGCGAuCCGCGCaaGCUggACGGCc -3'
miRNA:   3'- -GCGGau--UGUU-GGCGCGggCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4207 0.66 0.533655
Target:  5'- gGCCUGAUGuccggcauuuucaucGCCGCGguuguuuuCCUGCUcgcgauggagcACGGCa -3'
miRNA:   3'- gCGGAUUGU---------------UGGCGC--------GGGCGA-----------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4417 0.79 0.074665
Target:  5'- gGCUgauucAACAACgCGCGCCUGCUGgGGCa -3'
miRNA:   3'- gCGGa----UUGUUG-GCGCGGGCGAUgCCG- -5'
28090 5' -57.5 NC_005887.1 + 4489 0.68 0.409282
Target:  5'- uGCCgAACGGCgcgcgcaucgCGCGUCUGCUcgccgacuACGGCg -3'
miRNA:   3'- gCGGaUUGUUG----------GCGCGGGCGA--------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.