miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 42071 0.7 0.323154
Target:  5'- aCGCCacGCAGuucCCGCGCCaCGUcuuuCGGCa -3'
miRNA:   3'- -GCGGauUGUU---GGCGCGG-GCGau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 41984 0.67 0.457381
Target:  5'- uCGCCUAucagcagcACGGCCuGCgGCCCacgucgagugucGCcGCGGCg -3'
miRNA:   3'- -GCGGAU--------UGUUGG-CG-CGGG------------CGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41617 0.68 0.425284
Target:  5'- gGCCggcGCGGCCcgugaggaucugcuGCGUCUGC-GCGGCg -3'
miRNA:   3'- gCGGau-UGUUGG--------------CGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41529 0.67 0.487652
Target:  5'- gGCC--GCGAUCGCGCgaGC-AUGGCu -3'
miRNA:   3'- gCGGauUGUUGGCGCGggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41342 0.68 0.400046
Target:  5'- aGCCgguguACAGCgCGCGCaCgGCggcCGGCa -3'
miRNA:   3'- gCGGau---UGUUG-GCGCG-GgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 41274 0.66 0.550774
Target:  5'- gCGCCgu-CGACCugcgcacggGCGCgCUGCUGCcgccgGGCa -3'
miRNA:   3'- -GCGGauuGUUGG---------CGCG-GGCGAUG-----CCG- -5'
28090 5' -57.5 NC_005887.1 + 40947 0.66 0.540054
Target:  5'- aCGCCgagcGCAugCuCGaCCGCUuCGGCg -3'
miRNA:   3'- -GCGGau--UGUugGcGCgGGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40922 0.69 0.339248
Target:  5'- aCGCCUuccAGCAGCuCGCGUucgucuugCCGCUGcCGaGCg -3'
miRNA:   3'- -GCGGA---UUGUUG-GCGCG--------GGCGAU-GC-CG- -5'
28090 5' -57.5 NC_005887.1 + 40911 0.71 0.28544
Target:  5'- cCGCCgaaGGCuACCGCGCgCGCaccgaguuCGGCa -3'
miRNA:   3'- -GCGGa--UUGuUGGCGCGgGCGau------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40854 0.66 0.550774
Target:  5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3'
miRNA:   3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 40759 0.73 0.203719
Target:  5'- uCGCCguUGGCGcGCCGCGCgCCGCcgagcCGGCg -3'
miRNA:   3'- -GCGG--AUUGU-UGGCGCG-GGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40656 0.68 0.428147
Target:  5'- uGCCgcGCAGCuUGCGCUCGUgcucGgGGCg -3'
miRNA:   3'- gCGGauUGUUG-GCGCGGGCGa---UgCCG- -5'
28090 5' -57.5 NC_005887.1 + 40644 0.69 0.373151
Target:  5'- gGCaCUGACGAgCGCGCgCCGaucacCGGCc -3'
miRNA:   3'- gCG-GAUUGUUgGCGCG-GGCgau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40354 0.66 0.540054
Target:  5'- gGCCgucgagcGCGGCCGUGCC-GCUcgucGCGcGCg -3'
miRNA:   3'- gCGGau-----UGUUGGCGCGGgCGA----UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 40344 0.68 0.409282
Target:  5'- uGCCcuGCAuGCCGCGCUCGUaguagcCGGCc -3'
miRNA:   3'- gCGGauUGU-UGGCGCGGGCGau----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40126 0.73 0.214825
Target:  5'- aCGCCUAcaGCGugCgGUGCgCGCUGCGcGCc -3'
miRNA:   3'- -GCGGAU--UGUugG-CGCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 39816 0.68 0.390944
Target:  5'- cCGCCcGACAGCgccuUGCGCa-GCgUGCGGCa -3'
miRNA:   3'- -GCGGaUUGUUG----GCGCGggCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 39763 0.69 0.339248
Target:  5'- cCGCCUuguccGCGuACCGCuCgCCGCUcACGGCc -3'
miRNA:   3'- -GCGGAu----UGU-UGGCGcG-GGCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 39437 0.72 0.226446
Target:  5'- aGCUUGGCGGCgGCGUcguUCGCgGCGGCc -3'
miRNA:   3'- gCGGAUUGUUGgCGCG---GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 39391 0.68 0.428147
Target:  5'- gGCCggcggcGCAACCGUGgucgcgaCCGCguuCGGCa -3'
miRNA:   3'- gCGGau----UGUUGGCGCg------GGCGau-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.