miRNA display CGI


Results 1 - 20 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 4792 0.66 0.540054
Target:  5'- aGCCggcgaGGCCGUGCUCGCggaucuCGcGCa -3'
miRNA:   3'- gCGGauug-UUGGCGCGGGCGau----GC-CG- -5'
28090 5' -57.5 NC_005887.1 + 40354 0.66 0.540054
Target:  5'- gGCCgucgagcGCGGCCGUGCC-GCUcgucGCGcGCg -3'
miRNA:   3'- gCGGau-----UGUUGGCGCGGgCGA----UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 11310 0.66 0.518834
Target:  5'- gGCCggcucGGCAGCgaGCGCcgcaaCCGCgACGGCc -3'
miRNA:   3'- gCGGa----UUGUUGg-CGCG-----GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31826 0.66 0.518834
Target:  5'- uGCCcuucuuGCcGCCGC-CCCGUuccgaaUACGGCu -3'
miRNA:   3'- gCGGau----UGuUGGCGcGGGCG------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3342 0.66 0.497951
Target:  5'- uGCgCUGAacgaGAUCGCGUCCGUcaaGGCg -3'
miRNA:   3'- gCG-GAUUg---UUGGCGCGGGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 29716 0.66 0.536851
Target:  5'- uCGCCgucGCGucgcaggaucacgcGCCGCGCgUGC-ACGGUc -3'
miRNA:   3'- -GCGGau-UGU--------------UGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17282 0.66 0.548625
Target:  5'- aCGUCgGGCGgcGCCGCGCgCGCaaacgccgguuCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGau---------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 9733 0.66 0.529405
Target:  5'- aCGCCcGGCAGCUGaacaaGCuuGCguggAUGGUg -3'
miRNA:   3'- -GCGGaUUGUUGGCg----CGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26524 0.66 0.505218
Target:  5'- gCGCCUGcaguuucaggucguGCAcCuCGUGCCaCGgUGCGGUg -3'
miRNA:   3'- -GCGGAU--------------UGUuG-GCGCGG-GCgAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 26070 0.66 0.508347
Target:  5'- -uCCUGGuCAGCgCGUcagcgGCCCGC-GCGGCg -3'
miRNA:   3'- gcGGAUU-GUUG-GCG-----CGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17412 0.66 0.507303
Target:  5'- aCGUCggcGGCAuggcgaagaacAUCGCGCUcgucgagCGCUACGGCc -3'
miRNA:   3'- -GCGGa--UUGU-----------UGGCGCGG-------GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 17741 0.66 0.497951
Target:  5'- aCGCUcGGCAcgGCCGCG-CgGCUgAUGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCgGgCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 10080 0.66 0.508347
Target:  5'- aGCC--GCAuuCCGUcgugugggcgGCCCGCgccgACGGCc -3'
miRNA:   3'- gCGGauUGUu-GGCG----------CGGGCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 34360 0.66 0.540054
Target:  5'- gGCUggaGACGAgCGC-CCCGCguaucagagUGCGGCc -3'
miRNA:   3'- gCGGa--UUGUUgGCGcGGGCG---------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 23229 0.66 0.518834
Target:  5'- aCGCC-GACGGCaCGCGa--GCgGCGGCg -3'
miRNA:   3'- -GCGGaUUGUUG-GCGCgggCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15373 0.66 0.528344
Target:  5'- aCGCCcgAGCAggucgacGCCGCGCUgauCGCgcGCGGg -3'
miRNA:   3'- -GCGGa-UUGU-------UGGCGCGG---GCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 40947 0.66 0.540054
Target:  5'- aCGCCgagcGCAugCuCGaCCGCUuCGGCg -3'
miRNA:   3'- -GCGGau--UGUugGcGCgGGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7442 0.66 0.518834
Target:  5'- gGCgCUGGCGugCGCGUC-GUgauCGGCa -3'
miRNA:   3'- gCG-GAUUGUugGCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 26415 0.66 0.529405
Target:  5'- uCGagCUGGCGGCCGCGCgggaacgcgCGCUGCaGCc -3'
miRNA:   3'- -GCg-GAUUGUUGGCGCGg--------GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 2350 0.66 0.529405
Target:  5'- gGCg-GGCGACCaGCGCUCGCa--GGCc -3'
miRNA:   3'- gCGgaUUGUUGG-CGCGGGCGaugCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.