miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 9231 0.71 0.28544
Target:  5'- gGuCCUAGCgAACUGCGCCgCGU--CGGCg -3'
miRNA:   3'- gC-GGAUUG-UUGGCGCGG-GCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 3168 0.72 0.244238
Target:  5'- gCGCCUcGACAaguucgggcagcuGCCGCGCCCGg-ACaGCg -3'
miRNA:   3'- -GCGGA-UUGU-------------UGGCGCGGGCgaUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 14522 0.72 0.244872
Target:  5'- cCGCUU-GCAGgCGCGgCCGUcgGCGGCg -3'
miRNA:   3'- -GCGGAuUGUUgGCGCgGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5421 0.72 0.244872
Target:  5'- gCGCCgcaGCGACCGgcgcgaccacgcCGCCCGCU--GGCa -3'
miRNA:   3'- -GCGGau-UGUUGGC------------GCGGGCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 27787 0.72 0.251285
Target:  5'- gCGCCaUGACGACgGCGCCgaCGCa--GGCg -3'
miRNA:   3'- -GCGG-AUUGUUGgCGCGG--GCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 18004 0.71 0.263851
Target:  5'- aGCCUGACcgaauggGACCGcCGCgCGCuUACGcGCg -3'
miRNA:   3'- gCGGAUUG-------UUGGC-GCGgGCG-AUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 17028 0.71 0.264526
Target:  5'- uGCUUGGCAACggaucggaUGCGCagcggcaCGCUugGGCg -3'
miRNA:   3'- gCGGAUUGUUG--------GCGCGg------GCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 2926 0.71 0.264526
Target:  5'- cCGCCgccaAGCUGCGCaagCGCcGCGGCa -3'
miRNA:   3'- -GCGGauugUUGGCGCGg--GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14014 0.71 0.278327
Target:  5'- gCGCCUccGCAACCGCcgGCgCGCcgcCGGCg -3'
miRNA:   3'- -GCGGAu-UGUUGGCG--CGgGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40126 0.73 0.214825
Target:  5'- aCGCCUAcaGCGugCgGUGCgCGCUGCGcGCc -3'
miRNA:   3'- -GCGGAU--UGUugG-CGCGgGCGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 3722 0.73 0.214825
Target:  5'- gCGCCgaccGCGAuCCGCGCaaGCUggACGGCc -3'
miRNA:   3'- -GCGGau--UGUU-GGCGCGggCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13369 0.73 0.212563
Target:  5'- aGCCcGGCGAUgGCGCUCGCgcugaaggccggcGCGGCg -3'
miRNA:   3'- gCGGaUUGUUGgCGCGGGCGa------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14483 0.77 0.099368
Target:  5'- gGCCUcGCGcagAUCGUGCCCGCcGCGGUg -3'
miRNA:   3'- gCGGAuUGU---UGGCGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35308 0.77 0.114448
Target:  5'- gGCCUucucuGCAucgcuccacuGCCGCGCgCCGCgGCGGCc -3'
miRNA:   3'- gCGGAu----UGU----------UGGCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27332 0.76 0.11771
Target:  5'- gGCCacguCGACUGCGCCaCGCgcaGCGGCg -3'
miRNA:   3'- gCGGauu-GUUGGCGCGG-GCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14210 0.75 0.139168
Target:  5'- gGCCUcgGACAggGCgGCGCCgCGCUGuuCGGCg -3'
miRNA:   3'- gCGGA--UUGU--UGgCGCGG-GCGAU--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 1480 0.75 0.151196
Target:  5'- aCGCCgacGGCGugCgGCGCUCGC-GCGGCg -3'
miRNA:   3'- -GCGGa--UUGUugG-CGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32942 0.74 0.178116
Target:  5'- aCGUCUcAACGACCGCGCgaauacguucUCGC-GCGGCg -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG----------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40759 0.73 0.203719
Target:  5'- uCGCCguUGGCGcGCCGCGCgCCGCcgagcCGGCg -3'
miRNA:   3'- -GCGG--AUUGU-UGGCGCG-GGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 28328 0.73 0.209209
Target:  5'- aGCCUGuugucgGCGuCUGCGCCgGC-GCGGCa -3'
miRNA:   3'- gCGGAU------UGUuGGCGCGGgCGaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.