miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 4492 1.12 0.000264
Target:  5'- cCGCCUAACAACCGCGCCCGCUACGGCg -3'
miRNA:   3'- -GCGGAUUGUUGGCGCGGGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27825 0.81 0.05756
Target:  5'- gCGCCgccGACGGCCGCGCCUGCaaGCGGa -3'
miRNA:   3'- -GCGGa--UUGUUGGCGCGGGCGa-UGCCg -5'
28090 5' -57.5 NC_005887.1 + 4417 0.79 0.074665
Target:  5'- gGCUgauucAACAACgCGCGCCUGCUGgGGCa -3'
miRNA:   3'- gCGGa----UUGUUG-GCGCGGGCGAUgCCG- -5'
28090 5' -57.5 NC_005887.1 + 29171 0.78 0.086177
Target:  5'- gGCCUGcuCGACCGCuCCCGCUgucugcgcgcgcGCGGCa -3'
miRNA:   3'- gCGGAUu-GUUGGCGcGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 36820 0.78 0.093877
Target:  5'- gCGCagaauCGugCGUGCCUGCUGCGGCc -3'
miRNA:   3'- -GCGgauu-GUugGCGCGGGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35380 0.78 0.096586
Target:  5'- gGCCUGcaGCAGCUcaugcucgauGCGCCCGCgcACGGCc -3'
miRNA:   3'- gCGGAU--UGUUGG----------CGCGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14483 0.77 0.099368
Target:  5'- gGCCUcGCGcagAUCGUGCCCGCcGCGGUg -3'
miRNA:   3'- gCGGAuUGU---UGGCGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 13769 0.77 0.11127
Target:  5'- -aCCUcguCGACCGCGUCCGCgcagcggGCGGCg -3'
miRNA:   3'- gcGGAuu-GUUGGCGCGGGCGa------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35308 0.77 0.114448
Target:  5'- gGCCUucucuGCAucgcuccacuGCCGCGCgCCGCgGCGGCc -3'
miRNA:   3'- gCGGAu----UGU----------UGGCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27332 0.76 0.11771
Target:  5'- gGCCacguCGACUGCGCCaCGCgcaGCGGCg -3'
miRNA:   3'- gCGGauu-GUUGGCGCGG-GCGa--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7265 0.76 0.128024
Target:  5'- cCGCCcgaaGACGACuucgaaguCGCGCCCGCcgacgACGGCa -3'
miRNA:   3'- -GCGGa---UUGUUG--------GCGCGGGCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14210 0.75 0.139168
Target:  5'- gGCCUcgGACAggGCgGCGCCgCGCUGuuCGGCg -3'
miRNA:   3'- gCGGA--UUGU--UGgCGCGG-GCGAU--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 1480 0.75 0.151196
Target:  5'- aCGCCgacGGCGugCgGCGCUCGC-GCGGCg -3'
miRNA:   3'- -GCGGa--UUGUugG-CGCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 32942 0.74 0.178116
Target:  5'- aCGUCUcAACGACCGCGCgaauacguucUCGC-GCGGCg -3'
miRNA:   3'- -GCGGA-UUGUUGGCGCG----------GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 9063 0.73 0.187996
Target:  5'- aCGCggAugGAagUGCGCCgGCUGCGGCg -3'
miRNA:   3'- -GCGgaUugUUg-GCGCGGgCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 36916 0.73 0.193115
Target:  5'- uGCC-AGCGGgcgcguggUCGCGCCgguCGCUGCGGCg -3'
miRNA:   3'- gCGGaUUGUU--------GGCGCGG---GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27363 0.73 0.193115
Target:  5'- aCGCCU-GCGGCCuGCgcgGCCUGC-GCGGCg -3'
miRNA:   3'- -GCGGAuUGUUGG-CG---CGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 1059 0.73 0.198355
Target:  5'- uGCCcGGCGGCagcagCGCGCCCGUgcgcaggucgACGGCg -3'
miRNA:   3'- gCGGaUUGUUG-----GCGCGGGCGa---------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40759 0.73 0.203719
Target:  5'- uCGCCguUGGCGcGCCGCGCgCCGCcgagcCGGCg -3'
miRNA:   3'- -GCGG--AUUGU-UGGCGCG-GGCGau---GCCG- -5'
28090 5' -57.5 NC_005887.1 + 5246 0.73 0.208654
Target:  5'- gGCCgcGCGAUCGCcgaggcugugcucGCCCGCUuCGGUg -3'
miRNA:   3'- gCGGauUGUUGGCG-------------CGGGCGAuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.