miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 19454 0.66 0.555081
Target:  5'- gCGCCUGAUAGauGCGCCaccagCGCgcgaggaucugauaGCGGCc -3'
miRNA:   3'- -GCGGAUUGUUggCGCGG-----GCGa-------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 7382 0.66 0.514629
Target:  5'- uCGCCUucaucAACAACCugcgcaCGCCCGCcgaguucgaagcCGGCg -3'
miRNA:   3'- -GCGGA-----UUGUUGGc-----GCGGGCGau----------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 35950 0.66 0.508347
Target:  5'- gCGCCUugucGACuuCCGCGUaCGCUuCGaGCa -3'
miRNA:   3'- -GCGGA----UUGuuGGCGCGgGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 4492 1.12 0.000264
Target:  5'- cCGCCUAACAACCGCGCCCGCUACGGCg -3'
miRNA:   3'- -GCGGAUUGUUGGCGCGGGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 30950 0.66 0.540054
Target:  5'- uGCCuUGGCGgcGCCGgcCGCCagCGCUcCGGCu -3'
miRNA:   3'- gCGG-AUUGU--UGGC--GCGG--GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25391 0.66 0.540054
Target:  5'- uCGCC-GAC-AUUGcCGCCCGC-GCGGUu -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5913 0.66 0.540054
Target:  5'- gGCCgaagGGCAagaaGCCG-GCCgCGCggaagGCGGUg -3'
miRNA:   3'- gCGGa---UUGU----UGGCgCGG-GCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4207 0.66 0.533655
Target:  5'- gGCCUGAUGuccggcauuuucaucGCCGCGguuguuuuCCUGCUcgcgauggagcACGGCa -3'
miRNA:   3'- gCGGAUUGU---------------UGGCGC--------GGGCGA-----------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 6626 0.66 0.529405
Target:  5'- gGCC--ACGACCGCGaCCgaGCUGCacGCg -3'
miRNA:   3'- gCGGauUGUUGGCGC-GGg-CGAUGc-CG- -5'
28090 5' -57.5 NC_005887.1 + 2423 0.66 0.518834
Target:  5'- gCGUCgu-CGA-CGCGCCCGgCUcgaucugcGCGGCa -3'
miRNA:   3'- -GCGGauuGUUgGCGCGGGC-GA--------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29920 0.66 0.518834
Target:  5'- gGUCcaucGCGAUCGCGCgCGC-GCGGUg -3'
miRNA:   3'- gCGGau--UGUUGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25053 0.66 0.529405
Target:  5'- gCGCCg---AACCgGCGUuuGCgcgcGCGGCg -3'
miRNA:   3'- -GCGGauugUUGG-CGCGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40854 0.66 0.550774
Target:  5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3'
miRNA:   3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 29461 0.66 0.518834
Target:  5'- uCGCCgu---GCCGaucaGCUCGCgcACGGCa -3'
miRNA:   3'- -GCGGauuguUGGCg---CGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 11345 0.66 0.550774
Target:  5'- gGCCUGc--GCCGCGCCaCGCgagagAC-GCa -3'
miRNA:   3'- gCGGAUuguUGGCGCGG-GCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 33047 0.66 0.529405
Target:  5'- gCGUC-GGCGuuuCgGUGCCCGUaaccUGCGGCg -3'
miRNA:   3'- -GCGGaUUGUu--GgCGCGGGCG----AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 28316 0.66 0.518834
Target:  5'- uCGUCUca-GGCUGCGCCgGCggcgcgcCGGCg -3'
miRNA:   3'- -GCGGAuugUUGGCGCGGgCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 37445 0.66 0.508347
Target:  5'- gCGCacgAACAcCuCGCGCCgGCccuCGGCg -3'
miRNA:   3'- -GCGga-UUGUuG-GCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 8538 0.66 0.549699
Target:  5'- cCGaCCUGACAcCCGCGUgguggccguggguCCGCgcuUGGUg -3'
miRNA:   3'- -GC-GGAUUGUuGGCGCG-------------GGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 10788 0.66 0.540054
Target:  5'- gGUCgaguggGACGACUGCGCgC-CUACGGa -3'
miRNA:   3'- gCGGa-----UUGUUGGCGCGgGcGAUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.