miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 6500 0.69 0.707583
Target:  5'- cGAGCGCaauccgcaggcgaUGaucuacGCCGACGCGgcGCACGAGGa -3'
miRNA:   3'- -CUCGUG-------------AC------UGGUUGCGU--UGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 6838 0.67 0.805376
Target:  5'- aAGCGCUuGCCGACGauauuuACACGcAGGc -3'
miRNA:   3'- cUCGUGAcUGGUUGCgu----UGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 8385 0.68 0.763861
Target:  5'- cGGUGCUGACgGACGCcgcACGCGAc-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGu--UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 8458 0.69 0.708712
Target:  5'- cGAGCACgacGACCAAUaCGGCgACGGAGc -3'
miRNA:   3'- -CUCGUGa--CUGGUUGcGUUG-UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 8722 0.66 0.869899
Target:  5'- aAGCGCU--UCGuCGCGGcCACGAAGGa -3'
miRNA:   3'- cUCGUGAcuGGUuGCGUU-GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 9210 0.69 0.68598
Target:  5'- cGGCACgGucggcugcuucuACCGACGCAACgGCGAGGa -3'
miRNA:   3'- cUCGUGaC------------UGGUUGCGUUG-UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 9307 0.66 0.861425
Target:  5'- cGGGCACcGaaacGCCGACGC-ACACGuccGGu -3'
miRNA:   3'- -CUCGUGaC----UGGUUGCGuUGUGCuu-CC- -5'
28091 5' -50.9 NC_005887.1 + 9601 0.68 0.784969
Target:  5'- uGGCGCgcGCCGGCGCGcACGCGAGc- -3'
miRNA:   3'- cUCGUGacUGGUUGCGU-UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 11182 0.69 0.719961
Target:  5'- cGAGCACa-AgUGGCGCGACACGAuGGu -3'
miRNA:   3'- -CUCGUGacUgGUUGCGUUGUGCUuCC- -5'
28091 5' -50.9 NC_005887.1 + 11395 0.69 0.697381
Target:  5'- gGAGCGCUGgcgGCCGGCGC--CGCcAAGGc -3'
miRNA:   3'- -CUCGUGAC---UGGUUGCGuuGUGcUUCC- -5'
28091 5' -50.9 NC_005887.1 + 11492 0.68 0.773439
Target:  5'- uGGCAUcagGACCAGCGCAucaacauGCGCGGc-- -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGU-------UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 11601 0.75 0.400466
Target:  5'- cGGUcgaGCUGACCGACgGCGAaguCGCGAAGGc -3'
miRNA:   3'- cUCG---UGACUGGUUG-CGUU---GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 12057 0.66 0.878101
Target:  5'- cGGC-CUGACUGcgaacgucguGCGCGGCACGAu-- -3'
miRNA:   3'- cUCGuGACUGGU----------UGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 12490 0.69 0.696244
Target:  5'- -cGCGCUGAUCGAUucaGCGGCgcuggauccgcagACGAAGGc -3'
miRNA:   3'- cuCGUGACUGGUUG---CGUUG-------------UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 12561 0.71 0.570835
Target:  5'- cAGCuACUGGCCcgagcuGCGCGACGCGgcGa -3'
miRNA:   3'- cUCG-UGACUGGu-----UGCGUUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 12631 0.66 0.886023
Target:  5'- cGGCGCgUGAUCcugcGACGCGACgGCGAGuGGc -3'
miRNA:   3'- cUCGUG-ACUGG----UUGCGUUG-UGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 12795 0.76 0.354161
Target:  5'- aGGCGCUGACCcuCGUGA-ACGAGGGg -3'
miRNA:   3'- cUCGUGACUGGuuGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 12868 0.68 0.774496
Target:  5'- aGGCAC-GACCGugGCAggugccguGCGCGAGc- -3'
miRNA:   3'- cUCGUGaCUGGUugCGU--------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 12953 0.66 0.869899
Target:  5'- cGAGC-CUGAUCGcgaccGCGCcGCAUGGgccgAGGg -3'
miRNA:   3'- -CUCGuGACUGGU-----UGCGuUGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 13386 0.71 0.593752
Target:  5'- -cGCGCUGaagGCCGGCGCGGCggACGucGGc -3'
miRNA:   3'- cuCGUGAC---UGGUUGCGUUG--UGCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.