miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 948 0.66 0.869899
Target:  5'- cGAGUGCUucGGCgAAggcgUGCAGCACGAGGu -3'
miRNA:   3'- -CUCGUGA--CUGgUU----GCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 1233 0.67 0.834455
Target:  5'- cGGGCGCUG-CgCGGCGCucagcACGCGAAa- -3'
miRNA:   3'- -CUCGUGACuG-GUUGCGu----UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 1421 0.67 0.805376
Target:  5'- cGGCAa-GACgAACGCGagcuGCugGAAGGc -3'
miRNA:   3'- cUCGUgaCUGgUUGCGU----UGugCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 2072 0.7 0.674522
Target:  5'- cGAGCggcaccgacuuGCcGGCCAGCgGCAGCACGAAc- -3'
miRNA:   3'- -CUCG-----------UGaCUGGUUG-CGUUGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 2870 0.71 0.570835
Target:  5'- cAGC-CUGGCCAGCGgCAACACGcgcuuuucAGGc -3'
miRNA:   3'- cUCGuGACUGGUUGC-GUUGUGCu-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 3046 0.68 0.753077
Target:  5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3'
miRNA:   3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 3080 0.73 0.482038
Target:  5'- aGGCGCUGaacGCCGACcacgGCcGCAUGAAGGa -3'
miRNA:   3'- cUCGUGAC---UGGUUG----CGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3115 0.68 0.774496
Target:  5'- uGGCACccgcauccgUGAacuGCGCAAgGCGAAGGg -3'
miRNA:   3'- cUCGUG---------ACUgguUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3957 0.68 0.774496
Target:  5'- -cGCACUGACCGAaccggagauCGCAAUgugcaacgaacgACGgcGGa -3'
miRNA:   3'- cuCGUGACUGGUU---------GCGUUG------------UGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 4115 0.7 0.63762
Target:  5'- cGAGCGCUcGACCAucccggccacGCGCAaggcugcGCGCGAcuggcucGGGu -3'
miRNA:   3'- -CUCGUGA-CUGGU----------UGCGU-------UGUGCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 4275 1.12 0.001187
Target:  5'- cGAGCACUGACCAACGCAACACGAAGGg -3'
miRNA:   3'- -CUCGUGACUGGUUGCGUUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 4342 0.68 0.784969
Target:  5'- aGGaACUGAUCGACGCcGGCGCGGAuguGGa -3'
miRNA:   3'- cUCgUGACUGGUUGCG-UUGUGCUU---CC- -5'
28091 5' -50.9 NC_005887.1 + 4667 0.73 0.503679
Target:  5'- -cGCGCaGACCGcuGCGCAGacgGCGAGGGu -3'
miRNA:   3'- cuCGUGaCUGGU--UGCGUUg--UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 4951 0.66 0.861425
Target:  5'- aGGCAgUcgcGACC-GCGCAGCGCcagcuGAAGGa -3'
miRNA:   3'- cUCGUgA---CUGGuUGCGUUGUG-----CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 5026 0.67 0.824982
Target:  5'- aGGCGCaGACCGAaGCca-ACGAAGGc -3'
miRNA:   3'- cUCGUGaCUGGUUgCGuugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 5144 0.67 0.795266
Target:  5'- -cGCGCUGcCCGACGuCGGCGCGccGc -3'
miRNA:   3'- cuCGUGACuGGUUGC-GUUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 5377 0.67 0.815285
Target:  5'- cGAGCuc-GACCcGCGCGACGCcGAGa -3'
miRNA:   3'- -CUCGugaCUGGuUGCGUUGUGcUUCc -5'
28091 5' -50.9 NC_005887.1 + 5709 0.7 0.674522
Target:  5'- uGGGCGCaGACCAcgacGCGCAGgA-GAAGGc -3'
miRNA:   3'- -CUCGUGaCUGGU----UGCGUUgUgCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 6371 0.8 0.191198
Target:  5'- cGAGCACaucacgGGCgAACGCGGgGCGAAGGg -3'
miRNA:   3'- -CUCGUGa-----CUGgUUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 6419 0.69 0.707583
Target:  5'- aGGCGCUGGCCGAUcugaacgGCAACACcgcGGc -3'
miRNA:   3'- cUCGUGACUGGUUG-------CGUUGUGcuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.