miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 41805 0.75 0.400466
Target:  5'- -cGCGCUGuauCCGGCGCGgcGCGCGgcGGc -3'
miRNA:   3'- cuCGUGACu--GGUUGCGU--UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 41608 0.69 0.708712
Target:  5'- aGGUGCggcGGCCGGCGCGGCcCGuGAGGa -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGUUGuGC-UUCC- -5'
28091 5' -50.9 NC_005887.1 + 41452 0.66 0.861425
Target:  5'- -uGCGCUGcUCGgcACGCcGCGCGAGGa -3'
miRNA:   3'- cuCGUGACuGGU--UGCGuUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 40958 0.68 0.774496
Target:  5'- cGAGCg--GGCCcaugaugaacgAGCGCGACGCGcGGGa -3'
miRNA:   3'- -CUCGugaCUGG-----------UUGCGUUGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 40643 0.68 0.784969
Target:  5'- aGGCACUGACgAGCGC-GCGcCGAu-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGuUGU-GCUucc -5'
28091 5' -50.9 NC_005887.1 + 40360 0.66 0.843693
Target:  5'- cGAGCGC-GGCCGugcCGCucgucgcGCGCGAGGa -3'
miRNA:   3'- -CUCGUGaCUGGUu--GCGu------UGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 40157 0.73 0.503679
Target:  5'- -cGCGCUcGCCGcgugugagcuGCGCGacgGCACGAAGGg -3'
miRNA:   3'- cuCGUGAcUGGU----------UGCGU---UGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 39345 0.72 0.525731
Target:  5'- cGGCGCUGGCCGcagGCGCGuugacGgACGAAGa -3'
miRNA:   3'- cUCGUGACUGGU---UGCGU-----UgUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 37486 0.68 0.753077
Target:  5'- cGAGCg--GAUCGaucguGCGCuGCACGggGGa -3'
miRNA:   3'- -CUCGugaCUGGU-----UGCGuUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 37002 0.74 0.420039
Target:  5'- cGAGCACgcgcaGGCCGuACGCgAACACGucGGg -3'
miRNA:   3'- -CUCGUGa----CUGGU-UGCG-UUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 35488 0.67 0.815285
Target:  5'- -uGCGCguUGGCCGACGU--CGCGAGGu -3'
miRNA:   3'- cuCGUG--ACUGGUUGCGuuGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 33378 0.7 0.66302
Target:  5'- -uGCACgcGCCGGCGCGGCAgGAugAGGc -3'
miRNA:   3'- cuCGUGacUGGUUGCGUUGUgCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 32527 0.8 0.18587
Target:  5'- -cGCGCUGACCGGCuGCGACGCGuucgcGGGc -3'
miRNA:   3'- cuCGUGACUGGUUG-CGUUGUGCu----UCC- -5'
28091 5' -50.9 NC_005887.1 + 29661 0.66 0.886023
Target:  5'- -cGCGCgUGACCc-UGCAACGCGAu-- -3'
miRNA:   3'- cuCGUG-ACUGGuuGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 27784 0.72 0.536893
Target:  5'- aGAGCGCcaUGacgacggcGCCGACGCAG-GCGAGGGa -3'
miRNA:   3'- -CUCGUG--AC--------UGGUUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26967 0.67 0.833518
Target:  5'- -cGCGC-GAUCAGCGCGGCGuCGAccugcucGGGc -3'
miRNA:   3'- cuCGUGaCUGGUUGCGUUGU-GCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 26410 0.72 0.513555
Target:  5'- cGGCGCgUGGCCGGCGCAucgauuccggcccGCGCGGAa- -3'
miRNA:   3'- cUCGUG-ACUGGUUGCGU-------------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 26341 0.69 0.731113
Target:  5'- cGGCGCUGGCCGgguGCGCgAACAUcaccGGGa -3'
miRNA:   3'- cUCGUGACUGGU---UGCG-UUGUGcu--UCC- -5'
28091 5' -50.9 NC_005887.1 + 26211 0.66 0.869899
Target:  5'- cGGCGgUGGCCGGCcuGCAGCugGcgcacGGGu -3'
miRNA:   3'- cUCGUgACUGGUUG--CGUUGugCu----UCC- -5'
28091 5' -50.9 NC_005887.1 + 24954 0.74 0.43004
Target:  5'- -cGCGCgGGCCGccuugcGCGCGGcCGCGAGGGa -3'
miRNA:   3'- cuCGUGaCUGGU------UGCGUU-GUGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.