miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 4275 1.12 0.001187
Target:  5'- cGAGCACUGACCAACGCAACACGAAGGg -3'
miRNA:   3'- -CUCGUGACUGGUUGCGUUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 32527 0.8 0.18587
Target:  5'- -cGCGCUGACCGGCuGCGACGCGuucgcGGGc -3'
miRNA:   3'- cuCGUGACUGGUUG-CGUUGUGCu----UCC- -5'
28091 5' -50.9 NC_005887.1 + 6371 0.8 0.191198
Target:  5'- cGAGCACaucacgGGCgAACGCGGgGCGAAGGg -3'
miRNA:   3'- -CUCGUGa-----CUGgUUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 24724 0.76 0.340164
Target:  5'- cGGCGCUGACCGucguGCGCAgcguuuccaucuugcGCGCGAgcgcGGGa -3'
miRNA:   3'- cUCGUGACUGGU----UGCGU---------------UGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 12795 0.76 0.354161
Target:  5'- aGGCGCUGACCcuCGUGA-ACGAGGGg -3'
miRNA:   3'- cUCGUGACUGGuuGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 11601 0.75 0.400466
Target:  5'- cGGUcgaGCUGACCGACgGCGAaguCGCGAAGGc -3'
miRNA:   3'- cUCG---UGACUGGUUG-CGUU---GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 41805 0.75 0.400466
Target:  5'- -cGCGCUGuauCCGGCGCGgcGCGCGgcGGc -3'
miRNA:   3'- cuCGUGACu--GGUUGCGU--UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 37002 0.74 0.420039
Target:  5'- cGAGCACgcgcaGGCCGuACGCgAACACGucGGg -3'
miRNA:   3'- -CUCGUGa----CUGGU-UGCG-UUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 24954 0.74 0.43004
Target:  5'- -cGCGCgGGCCGccuugcGCGCGGcCGCGAGGGa -3'
miRNA:   3'- cuCGUGaCUGGU------UGCGUU-GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 17446 0.74 0.43004
Target:  5'- cGAGCGCUacGGCCcgaauccgacGCGCAACAUGAAGa -3'
miRNA:   3'- -CUCGUGA--CUGGu---------UGCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 13572 0.73 0.460857
Target:  5'- cGAGCA--GGCCGACG--ACGCGAAGGa -3'
miRNA:   3'- -CUCGUgaCUGGUUGCguUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3080 0.73 0.482038
Target:  5'- aGGCGCUGaacGCCGACcacgGCcGCAUGAAGGa -3'
miRNA:   3'- cUCGUGAC---UGGUUG----CGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 40157 0.73 0.503679
Target:  5'- -cGCGCUcGCCGcgugugagcuGCGCGacgGCACGAAGGg -3'
miRNA:   3'- cuCGUGAcUGGU----------UGCGU---UGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 15331 0.73 0.503679
Target:  5'- -cGCGCUcGCCGagguuGCGC-ACACGAAGGu -3'
miRNA:   3'- cuCGUGAcUGGU-----UGCGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 4667 0.73 0.503679
Target:  5'- -cGCGCaGACCGcuGCGCAGacgGCGAGGGu -3'
miRNA:   3'- cuCGUGaCUGGU--UGCGUUg--UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26410 0.72 0.513555
Target:  5'- cGGCGCgUGGCCGGCGCAucgauuccggcccGCGCGGAa- -3'
miRNA:   3'- cUCGUG-ACUGGUUGCGU-------------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 39345 0.72 0.525731
Target:  5'- cGGCGCUGGCCGcagGCGCGuugacGgACGAAGa -3'
miRNA:   3'- cUCGUGACUGGU---UGCGU-----UgUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 27784 0.72 0.536893
Target:  5'- aGAGCGCcaUGacgacggcGCCGACGCAG-GCGAGGGa -3'
miRNA:   3'- -CUCGUG--AC--------UGGUUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 12561 0.71 0.570835
Target:  5'- cAGCuACUGGCCcgagcuGCGCGACGCGgcGa -3'
miRNA:   3'- cUCG-UGACUGGu-----UGCGUUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 2870 0.71 0.570835
Target:  5'- cAGC-CUGGCCAGCGgCAACACGcgcuuuucAGGc -3'
miRNA:   3'- cUCGuGACUGGUUGC-GUUGUGCu-------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.