miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 3046 0.68 0.753077
Target:  5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3'
miRNA:   3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 33378 0.7 0.66302
Target:  5'- -uGCACgcGCCGGCGCGGCAgGAugAGGc -3'
miRNA:   3'- cuCGUGacUGGUUGCGUUGUgCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 18434 0.69 0.68598
Target:  5'- cGA-CGCUGAUCGGCGCGAUcucgacgcagGCGAAGa -3'
miRNA:   3'- -CUcGUGACUGGUUGCGUUG----------UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 12490 0.69 0.696244
Target:  5'- -cGCGCUGAUCGAUucaGCGGCgcuggauccgcagACGAAGGc -3'
miRNA:   3'- cuCGUGACUGGUUG---CGUUG-------------UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 11395 0.69 0.697381
Target:  5'- gGAGCGCUGgcgGCCGGCGC--CGCcAAGGc -3'
miRNA:   3'- -CUCGUGAC---UGGUUGCGuuGUGcUUCC- -5'
28091 5' -50.9 NC_005887.1 + 6419 0.69 0.707583
Target:  5'- aGGCGCUGGCCGAUcugaacgGCAACACcgcGGc -3'
miRNA:   3'- cUCGUGACUGGUUG-------CGUUGUGcuuCC- -5'
28091 5' -50.9 NC_005887.1 + 41608 0.69 0.708712
Target:  5'- aGGUGCggcGGCCGGCGCGGCcCGuGAGGa -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGUUGuGC-UUCC- -5'
28091 5' -50.9 NC_005887.1 + 26341 0.69 0.731113
Target:  5'- cGGCGCUGGCCGgguGCGCgAACAUcaccGGGa -3'
miRNA:   3'- cUCGUGACUGGU---UGCG-UUGUGcu--UCC- -5'
28091 5' -50.9 NC_005887.1 + 13452 0.68 0.753077
Target:  5'- cAGCACguucauccUGACgGGCGCGcagGCGCuGAAGGa -3'
miRNA:   3'- cUCGUG--------ACUGgUUGCGU---UGUG-CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 15835 0.7 0.628371
Target:  5'- cAGCGCUuGCgCGGCGCGAU-CGAGGGa -3'
miRNA:   3'- cUCGUGAcUG-GUUGCGUUGuGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 16768 0.71 0.616813
Target:  5'- uGGGCGC-GAUCGACGCG--AUGAAGGu -3'
miRNA:   3'- -CUCGUGaCUGGUUGCGUugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 13386 0.71 0.593752
Target:  5'- -cGCGCUGaagGCCGGCGCGGCggACGucGGc -3'
miRNA:   3'- cuCGUGAC---UGGUUGCGUUG--UGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 37002 0.74 0.420039
Target:  5'- cGAGCACgcgcaGGCCGuACGCgAACACGucGGg -3'
miRNA:   3'- -CUCGUGa----CUGGU-UGCG-UUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 17446 0.74 0.43004
Target:  5'- cGAGCGCUacGGCCcgaauccgacGCGCAACAUGAAGa -3'
miRNA:   3'- -CUCGUGA--CUGGu---------UGCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 24954 0.74 0.43004
Target:  5'- -cGCGCgGGCCGccuugcGCGCGGcCGCGAGGGa -3'
miRNA:   3'- cuCGUGaCUGGU------UGCGUU-GUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 13572 0.73 0.460857
Target:  5'- cGAGCA--GGCCGACG--ACGCGAAGGa -3'
miRNA:   3'- -CUCGUgaCUGGUUGCguUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3080 0.73 0.482038
Target:  5'- aGGCGCUGaacGCCGACcacgGCcGCAUGAAGGa -3'
miRNA:   3'- cUCGUGAC---UGGUUG----CGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 4667 0.73 0.503679
Target:  5'- -cGCGCaGACCGcuGCGCAGacgGCGAGGGu -3'
miRNA:   3'- cuCGUGaCUGGU--UGCGUUg--UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 40157 0.73 0.503679
Target:  5'- -cGCGCUcGCCGcgugugagcuGCGCGacgGCACGAAGGg -3'
miRNA:   3'- cuCGUGAcUGGU----------UGCGU---UGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 27784 0.72 0.536893
Target:  5'- aGAGCGCcaUGacgacggcGCCGACGCAG-GCGAGGGa -3'
miRNA:   3'- -CUCGUG--AC--------UGGUUGCGUUgUGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.