miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 29661 0.66 0.886023
Target:  5'- -cGCGCgUGACCc-UGCAACGCGAu-- -3'
miRNA:   3'- cuCGUG-ACUGGuuGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 8385 0.68 0.763861
Target:  5'- cGGUGCUGACgGACGCcgcACGCGAc-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGu--UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 11182 0.69 0.719961
Target:  5'- cGAGCACa-AgUGGCGCGACACGAuGGu -3'
miRNA:   3'- -CUCGUGacUgGUUGCGUUGUGCUuCC- -5'
28091 5' -50.9 NC_005887.1 + 4275 1.12 0.001187
Target:  5'- cGAGCACUGACCAACGCAACACGAAGGg -3'
miRNA:   3'- -CUCGUGACUGGUUGCGUUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 4951 0.66 0.861425
Target:  5'- aGGCAgUcgcGACC-GCGCAGCGCcagcuGAAGGa -3'
miRNA:   3'- cUCGUgA---CUGGuUGCGUUGUG-----CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 18787 0.66 0.852686
Target:  5'- -cGCACUG-CCGGCcgGCGAUGCGGGcGGc -3'
miRNA:   3'- cuCGUGACuGGUUG--CGUUGUGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 26967 0.67 0.833518
Target:  5'- -cGCGC-GAUCAGCGCGGCGuCGAccugcucGGGc -3'
miRNA:   3'- cuCGUGaCUGGUUGCGUUGU-GCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 5377 0.67 0.815285
Target:  5'- cGAGCuc-GACCcGCGCGACGCcGAGa -3'
miRNA:   3'- -CUCGugaCUGGuUGCGUUGUGcUUCc -5'
28091 5' -50.9 NC_005887.1 + 9601 0.68 0.784969
Target:  5'- uGGCGCgcGCCGGCGCGcACGCGAGc- -3'
miRNA:   3'- cUCGUGacUGGUUGCGU-UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 11492 0.68 0.773439
Target:  5'- uGGCAUcagGACCAGCGCAucaacauGCGCGGc-- -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGU-------UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 21023 0.68 0.774496
Target:  5'- -cGUACcGGCCGAUGCGgucgGCGCGguGGg -3'
miRNA:   3'- cuCGUGaCUGGUUGCGU----UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 6838 0.67 0.805376
Target:  5'- aAGCGCUuGCCGACGauauuuACACGcAGGc -3'
miRNA:   3'- cUCGUGAcUGGUUGCgu----UGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 12631 0.66 0.886023
Target:  5'- cGGCGCgUGAUCcugcGACGCGACgGCGAGuGGc -3'
miRNA:   3'- cUCGUG-ACUGG----UUGCGUUG-UGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 3957 0.68 0.774496
Target:  5'- -cGCACUGACCGAaccggagauCGCAAUgugcaacgaacgACGgcGGa -3'
miRNA:   3'- cuCGUGACUGGUU---------GCGUUG------------UGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 12057 0.66 0.878101
Target:  5'- cGGC-CUGACUGcgaacgucguGCGCGGCACGAu-- -3'
miRNA:   3'- cUCGuGACUGGU----------UGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 35488 0.67 0.815285
Target:  5'- -uGCGCguUGGCCGACGU--CGCGAGGu -3'
miRNA:   3'- cuCGUG--ACUGGUUGCGuuGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 3115 0.68 0.774496
Target:  5'- uGGCACccgcauccgUGAacuGCGCAAgGCGAAGGg -3'
miRNA:   3'- cUCGUG---------ACUgguUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 37486 0.68 0.753077
Target:  5'- cGAGCg--GAUCGaucguGCGCuGCACGggGGa -3'
miRNA:   3'- -CUCGugaCUGGU-----UGCGuUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 12953 0.66 0.869899
Target:  5'- cGAGC-CUGAUCGcgaccGCGCcGCAUGGgccgAGGg -3'
miRNA:   3'- -CUCGuGACUGGU-----UGCGuUGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 16678 0.66 0.843693
Target:  5'- --cCACUGACCGACgaugGCGACGCGcugcGGc -3'
miRNA:   3'- cucGUGACUGGUUG----CGUUGUGCuu--CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.