miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 3046 0.68 0.753077
Target:  5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3'
miRNA:   3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 13452 0.68 0.753077
Target:  5'- cAGCACguucauccUGACgGGCGCGcagGCGCuGAAGGa -3'
miRNA:   3'- cUCGUG--------ACUGgUUGCGU---UGUG-CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26341 0.69 0.731113
Target:  5'- cGGCGCUGGCCGgguGCGCgAACAUcaccGGGa -3'
miRNA:   3'- cUCGUGACUGGU---UGCG-UUGUGcu--UCC- -5'
28091 5' -50.9 NC_005887.1 + 11182 0.69 0.719961
Target:  5'- cGAGCACa-AgUGGCGCGACACGAuGGu -3'
miRNA:   3'- -CUCGUGacUgGUUGCGUUGUGCUuCC- -5'
28091 5' -50.9 NC_005887.1 + 8458 0.69 0.708712
Target:  5'- cGAGCACgacGACCAAUaCGGCgACGGAGc -3'
miRNA:   3'- -CUCGUGa--CUGGUUGcGUUG-UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 41608 0.69 0.708712
Target:  5'- aGGUGCggcGGCCGGCGCGGCcCGuGAGGa -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGUUGuGC-UUCC- -5'
28091 5' -50.9 NC_005887.1 + 6500 0.69 0.707583
Target:  5'- cGAGCGCaauccgcaggcgaUGaucuacGCCGACGCGgcGCACGAGGa -3'
miRNA:   3'- -CUCGUG-------------AC------UGGUUGCGU--UGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 6419 0.69 0.707583
Target:  5'- aGGCGCUGGCCGAUcugaacgGCAACACcgcGGc -3'
miRNA:   3'- cUCGUGACUGGUUG-------CGUUGUGcuuCC- -5'
28091 5' -50.9 NC_005887.1 + 11395 0.69 0.697381
Target:  5'- gGAGCGCUGgcgGCCGGCGC--CGCcAAGGc -3'
miRNA:   3'- -CUCGUGAC---UGGUUGCGuuGUGcUUCC- -5'
28091 5' -50.9 NC_005887.1 + 12490 0.69 0.696244
Target:  5'- -cGCGCUGAUCGAUucaGCGGCgcuggauccgcagACGAAGGc -3'
miRNA:   3'- cuCGUGACUGGUUG---CGUUG-------------UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 18434 0.69 0.68598
Target:  5'- cGA-CGCUGAUCGGCGCGAUcucgacgcagGCGAAGa -3'
miRNA:   3'- -CUcGUGACUGGUUGCGUUG----------UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 18237 0.69 0.68598
Target:  5'- -cGCAC-GACacGCGCAGCACGGccaAGGg -3'
miRNA:   3'- cuCGUGaCUGguUGCGUUGUGCU---UCC- -5'
28091 5' -50.9 NC_005887.1 + 9210 0.69 0.68598
Target:  5'- cGGCACgGucggcugcuucuACCGACGCAACgGCGAGGa -3'
miRNA:   3'- cUCGUGaC------------UGGUUGCGUUG-UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 2072 0.7 0.674522
Target:  5'- cGAGCggcaccgacuuGCcGGCCAGCgGCAGCACGAAc- -3'
miRNA:   3'- -CUCG-----------UGaCUGGUUG-CGUUGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 5709 0.7 0.674522
Target:  5'- uGGGCGCaGACCAcgacGCGCAGgA-GAAGGc -3'
miRNA:   3'- -CUCGUGaCUGGU----UGCGUUgUgCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 33378 0.7 0.66302
Target:  5'- -uGCACgcGCCGGCGCGGCAgGAugAGGc -3'
miRNA:   3'- cuCGUGacUGGUUGCGUUGUgCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 4115 0.7 0.63762
Target:  5'- cGAGCGCUcGACCAucccggccacGCGCAaggcugcGCGCGAcuggcucGGGu -3'
miRNA:   3'- -CUCGUGA-CUGGU----------UGCGU-------UGUGCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 15835 0.7 0.628371
Target:  5'- cAGCGCUuGCgCGGCGCGAU-CGAGGGa -3'
miRNA:   3'- cUCGUGAcUG-GUUGCGUUGuGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 16768 0.71 0.616813
Target:  5'- uGGGCGC-GAUCGACGCG--AUGAAGGu -3'
miRNA:   3'- -CUCGUGaCUGGUUGCGUugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 13386 0.71 0.593752
Target:  5'- -cGCGCUGaagGCCGGCGCGGCggACGucGGc -3'
miRNA:   3'- cuCGUGAC---UGGUUGCGUUG--UGCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.