miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 26967 0.67 0.833518
Target:  5'- -cGCGC-GAUCAGCGCGGCGuCGAccugcucGGGc -3'
miRNA:   3'- cuCGUGaCUGGUUGCGUUGU-GCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 5026 0.67 0.824982
Target:  5'- aGGCGCaGACCGAaGCca-ACGAAGGc -3'
miRNA:   3'- cUCGUGaCUGGUUgCGuugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 35488 0.67 0.815285
Target:  5'- -uGCGCguUGGCCGACGU--CGCGAGGu -3'
miRNA:   3'- cuCGUG--ACUGGUUGCGuuGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 5377 0.67 0.815285
Target:  5'- cGAGCuc-GACCcGCGCGACGCcGAGa -3'
miRNA:   3'- -CUCGugaCUGGuUGCGUUGUGcUUCc -5'
28091 5' -50.9 NC_005887.1 + 1421 0.67 0.805376
Target:  5'- cGGCAa-GACgAACGCGagcuGCugGAAGGc -3'
miRNA:   3'- cUCGUgaCUGgUUGCGU----UGugCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 6838 0.67 0.805376
Target:  5'- aAGCGCUuGCCGACGauauuuACACGcAGGc -3'
miRNA:   3'- cUCGUGAcUGGUUGCgu----UGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 20739 0.67 0.804373
Target:  5'- cAGCAUuuuuccgUGACCAAUGC-ACGCGccGGc -3'
miRNA:   3'- cUCGUG-------ACUGGUUGCGuUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 14313 0.67 0.804373
Target:  5'- aAGCGCaGGCCGACGCcgacaagcaggugAACGCGgcGa -3'
miRNA:   3'- cUCGUGaCUGGUUGCG-------------UUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 5144 0.67 0.795266
Target:  5'- -cGCGCUGcCCGACGuCGGCGCGccGc -3'
miRNA:   3'- cuCGUGACuGGUUGC-GUUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 40643 0.68 0.784969
Target:  5'- aGGCACUGACgAGCGC-GCGcCGAu-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGuUGU-GCUucc -5'
28091 5' -50.9 NC_005887.1 + 4342 0.68 0.784969
Target:  5'- aGGaACUGAUCGACGCcGGCGCGGAuguGGa -3'
miRNA:   3'- cUCgUGACUGGUUGCG-UUGUGCUU---CC- -5'
28091 5' -50.9 NC_005887.1 + 9601 0.68 0.784969
Target:  5'- uGGCGCgcGCCGGCGCGcACGCGAGc- -3'
miRNA:   3'- cUCGUGacUGGUUGCGU-UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 12868 0.68 0.774496
Target:  5'- aGGCAC-GACCGugGCAggugccguGCGCGAGc- -3'
miRNA:   3'- cUCGUGaCUGGUugCGU--------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 40958 0.68 0.774496
Target:  5'- cGAGCg--GGCCcaugaugaacgAGCGCGACGCGcGGGa -3'
miRNA:   3'- -CUCGugaCUGG-----------UUGCGUUGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 21023 0.68 0.774496
Target:  5'- -cGUACcGGCCGAUGCGgucgGCGCGguGGg -3'
miRNA:   3'- cuCGUGaCUGGUUGCGU----UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 3115 0.68 0.774496
Target:  5'- uGGCACccgcauccgUGAacuGCGCAAgGCGAAGGg -3'
miRNA:   3'- cUCGUG---------ACUgguUGCGUUgUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 3957 0.68 0.774496
Target:  5'- -cGCACUGACCGAaccggagauCGCAAUgugcaacgaacgACGgcGGa -3'
miRNA:   3'- cuCGUGACUGGUU---------GCGUUG------------UGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 11492 0.68 0.773439
Target:  5'- uGGCAUcagGACCAGCGCAucaacauGCGCGGc-- -3'
miRNA:   3'- cUCGUGa--CUGGUUGCGU-------UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 8385 0.68 0.763861
Target:  5'- cGGUGCUGACgGACGCcgcACGCGAc-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGu--UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 3046 0.68 0.753077
Target:  5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3'
miRNA:   3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.