miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 9568 0.67 0.346978
Target:  5'- gCGCGCGcCGAuccugcgcacgagccGGCUGCaugGCGCGcGCcGGCg -3'
miRNA:   3'- -GUGCGC-GUU---------------CCGACG---CGCGC-UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 13585 0.67 0.335527
Target:  5'- gACGCGaagGAGGCcGCGUacuucaucGCuGCUGGCa -3'
miRNA:   3'- gUGCGCg--UUCCGaCGCG--------CGcUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 21269 0.67 0.335527
Target:  5'- gCAC-CGCGGcGGCgGCGUauGCGcuGCUGGCg -3'
miRNA:   3'- -GUGcGCGUU-CCGaCGCG--CGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 28084 0.67 0.335527
Target:  5'- uCACGCuGCAugccguuuaccgGGGCgUGCGUGaCGGuCUGGUu -3'
miRNA:   3'- -GUGCG-CGU------------UCCG-ACGCGC-GCU-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 1581 0.67 0.335527
Target:  5'- -cCGCcgGCucGGCgGCGCGCGGCgcgccaacGGCg -3'
miRNA:   3'- guGCG--CGuuCCGaCGCGCGCUGa-------CCG- -5'
28092 3' -59.8 NC_005887.1 + 30219 0.67 0.335527
Target:  5'- gGCGCGCGAcGGCgGCcuGCuCGucCUGGCg -3'
miRNA:   3'- gUGCGCGUU-CCGaCG--CGcGCu-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 33645 0.67 0.327518
Target:  5'- aGCGCGC---GCUGCGCuCGGCgagGGUu -3'
miRNA:   3'- gUGCGCGuucCGACGCGcGCUGa--CCG- -5'
28092 3' -59.8 NC_005887.1 + 2385 0.67 0.327518
Target:  5'- aCACGcCGUuccGGaucCUGCGUGCcGCUGGCu -3'
miRNA:   3'- -GUGC-GCGuu-CC---GACGCGCGcUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 12147 0.67 0.327518
Target:  5'- uCGCGCGCcagauuGGUgacgauCGCGUGACgUGGCu -3'
miRNA:   3'- -GUGCGCGuu----CCGac----GCGCGCUG-ACCG- -5'
28092 3' -59.8 NC_005887.1 + 40688 0.67 0.327518
Target:  5'- cCugGCGC---GC-GCGCaCGGCUGGCa -3'
miRNA:   3'- -GugCGCGuucCGaCGCGcGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 42140 0.67 0.322781
Target:  5'- gGCGCGCAuucgcagagcagcgGGGCgaacugcgauuuauUGCgaauucGCGCGcGCUGGCu -3'
miRNA:   3'- gUGCGCGU--------------UCCG--------------ACG------CGCGC-UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 17011 0.67 0.319652
Target:  5'- cCACGCGCAGagcaaggugcuuGGCaacggaucggaUGCGCaGCGGCacgcuugGGCg -3'
miRNA:   3'- -GUGCGCGUU------------CCG-----------ACGCG-CGCUGa------CCG- -5'
28092 3' -59.8 NC_005887.1 + 26486 0.68 0.311928
Target:  5'- gCugGUGCGccuGCUGCGCGCG---GGCg -3'
miRNA:   3'- -GugCGCGUuc-CGACGCGCGCugaCCG- -5'
28092 3' -59.8 NC_005887.1 + 15098 0.68 0.311928
Target:  5'- gGCGaCGC-GGGCcgGCGCGCGAU--GCa -3'
miRNA:   3'- gUGC-GCGuUCCGa-CGCGCGCUGacCG- -5'
28092 3' -59.8 NC_005887.1 + 38734 0.68 0.311928
Target:  5'- uCACG-GCcgAAGcGCUGCGCG-GcCUGGCg -3'
miRNA:   3'- -GUGCgCG--UUC-CGACGCGCgCuGACCG- -5'
28092 3' -59.8 NC_005887.1 + 37860 0.68 0.311928
Target:  5'- gACGCGCGA---UGCGCGCGcCguucGGCa -3'
miRNA:   3'- gUGCGCGUUccgACGCGCGCuGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 39532 0.68 0.308878
Target:  5'- aCugGCGCc-GGCUcuguaccccaaucCGCGCGACgGGCu -3'
miRNA:   3'- -GugCGCGuuCCGAc------------GCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 2483 0.68 0.307362
Target:  5'- gAUGCGCGAGGCgcucagcgGUgagcggucgauugauGUGCGAC-GGCg -3'
miRNA:   3'- gUGCGCGUUCCGa-------CG---------------CGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 9902 0.68 0.304347
Target:  5'- -cCGCGCAGuGGCUGCGCaaccugaucGCcGCcGGCc -3'
miRNA:   3'- guGCGCGUU-CCGACGCG---------CGcUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 14115 0.68 0.304347
Target:  5'- cCGCuCGCGAaGCUGCGCGCG-CUG-Cu -3'
miRNA:   3'- -GUGcGCGUUcCGACGCGCGCuGACcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.