miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 4405 0.66 0.385648
Target:  5'- uGCGCGCc-GGCgaagGCGCgGCGAUccugcaaUGGUu -3'
miRNA:   3'- gUGCGCGuuCCGa---CGCG-CGCUG-------ACCG- -5'
28092 3' -59.8 NC_005887.1 + 1413 0.66 0.38387
Target:  5'- gCAUGCGCucGGCguugccgaacucggUGCGCGCG-C-GGUa -3'
miRNA:   3'- -GUGCGCGuuCCG--------------ACGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 39916 0.66 0.377689
Target:  5'- aGCGCGCGAGGUgucauucgucgGCGCG-GGCUucGCc -3'
miRNA:   3'- gUGCGCGUUCCGa----------CGCGCgCUGAc-CG- -5'
28092 3' -59.8 NC_005887.1 + 37690 0.66 0.377689
Target:  5'- -cUGCGCAGcGGuCUGCGCGUcGCUGa- -3'
miRNA:   3'- guGCGCGUU-CC-GACGCGCGcUGACcg -5'
28092 3' -59.8 NC_005887.1 + 6089 0.66 0.377689
Target:  5'- gUACGCggacgaagGCAcGGCcGCGCaCGAgCUGGCg -3'
miRNA:   3'- -GUGCG--------CGUuCCGaCGCGcGCU-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 15328 0.66 0.377689
Target:  5'- uCGCGCGCucgccGAGGUUGCGCacaCGAa-GGUg -3'
miRNA:   3'- -GUGCGCG-----UUCCGACGCGc--GCUgaCCG- -5'
28092 3' -59.8 NC_005887.1 + 38528 0.66 0.377689
Target:  5'- gGCGgGUAGGGUggGCGCuuacaccagcggGCGccACUGGCc -3'
miRNA:   3'- gUGCgCGUUCCGa-CGCG------------CGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 31384 0.66 0.377689
Target:  5'- gACGCGCucGGCguagcgGUGCGUGcCgUGGUu -3'
miRNA:   3'- gUGCGCGuuCCGa-----CGCGCGCuG-ACCG- -5'
28092 3' -59.8 NC_005887.1 + 23258 0.66 0.377689
Target:  5'- gGCGCGCAaaAGGCgcaGCuCGUGGC-GGUu -3'
miRNA:   3'- gUGCGCGU--UCCGa--CGcGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 14707 0.66 0.377689
Target:  5'- gGCGgGC-GGGCcGgGCGCGGCgaucgcgcaGGCg -3'
miRNA:   3'- gUGCgCGuUCCGaCgCGCGCUGa--------CCG- -5'
28092 3' -59.8 NC_005887.1 + 6304 0.66 0.375936
Target:  5'- aGCGCGuCGAGGCcuUGCGCcucgccgGCGccgaggugacgcuGCUGGUu -3'
miRNA:   3'- gUGCGC-GUUCCG--ACGCG-------CGC-------------UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 34256 0.66 0.368977
Target:  5'- aGCGCgGCGA-GCUGCGCGCGcGCUu-- -3'
miRNA:   3'- gUGCG-CGUUcCGACGCGCGC-UGAccg -5'
28092 3' -59.8 NC_005887.1 + 25821 0.66 0.368977
Target:  5'- gACGCGCccacucGGCgccggcgGCGaCGCGAUcGGCc -3'
miRNA:   3'- gUGCGCGuu----CCGa------CGC-GCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 6782 0.66 0.368977
Target:  5'- gCACGCacuaCAAgugggacaucGGCcucacGCuGCGCGACUGGCg -3'
miRNA:   3'- -GUGCGc---GUU----------CCGa----CG-CGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 1676 0.66 0.368977
Target:  5'- gCGCGCGCcAGGUgcagGaugGUGCGGCcGGUg -3'
miRNA:   3'- -GUGCGCGuUCCGa---Cg--CGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 30462 0.66 0.368977
Target:  5'- -cCGgGCuggaacAGGCgGUGCGCGACgcGGCc -3'
miRNA:   3'- guGCgCGu-----UCCGaCGCGCGCUGa-CCG- -5'
28092 3' -59.8 NC_005887.1 + 2202 0.66 0.368977
Target:  5'- aCACGCgGCGAGcGCgGCGCGCaGC-GcGCa -3'
miRNA:   3'- -GUGCG-CGUUC-CGaCGCGCGcUGaC-CG- -5'
28092 3' -59.8 NC_005887.1 + 17198 0.67 0.360404
Target:  5'- gCACGCgGCAAuGUUGCGCcgcgcaagcaggGCGugUGGg -3'
miRNA:   3'- -GUGCG-CGUUcCGACGCG------------CGCugACCg -5'
28092 3' -59.8 NC_005887.1 + 13385 0.67 0.351971
Target:  5'- -uCGCGCugAAGGCcgGCGCGgCgGACgucGGCg -3'
miRNA:   3'- guGCGCG--UUCCGa-CGCGC-G-CUGa--CCG- -5'
28092 3' -59.8 NC_005887.1 + 5396 0.67 0.349468
Target:  5'- --aGCGCGaccggugaaccggcGGGCgGCGCcgcaGCGACcGGCg -3'
miRNA:   3'- gugCGCGU--------------UCCGaCGCG----CGCUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.