miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 5723 0.71 0.181409
Target:  5'- gACGCGCAGGaGaagGCGCGCGAU--GCa -3'
miRNA:   3'- gUGCGCGUUC-Cga-CGCGCGCUGacCG- -5'
28092 3' -59.8 NC_005887.1 + 6089 0.66 0.377689
Target:  5'- gUACGCggacgaagGCAcGGCcGCGCaCGAgCUGGCg -3'
miRNA:   3'- -GUGCG--------CGUuCCGaCGCGcGCU-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 6304 0.66 0.375936
Target:  5'- aGCGCGuCGAGGCcuUGCGCcucgccgGCGccgaggugacgcuGCUGGUu -3'
miRNA:   3'- gUGCGC-GUUCCG--ACGCG-------CGC-------------UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 6782 0.66 0.368977
Target:  5'- gCACGCacuaCAAgugggacaucGGCcucacGCuGCGCGACUGGCg -3'
miRNA:   3'- -GUGCGc---GUU----------CCGa----CG-CGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 7107 0.66 0.404642
Target:  5'- uCGCGCGUggucuaacGAGGCgggGCgGCGCuGC-GGCg -3'
miRNA:   3'- -GUGCGCG--------UUCCGa--CG-CGCGcUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 7439 0.68 0.27544
Target:  5'- uUugGCGCu-GGCgUGCGCGUcguGAUcGGCa -3'
miRNA:   3'- -GugCGCGuuCCG-ACGCGCG---CUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 8325 0.71 0.191392
Target:  5'- aCGCGCuguuucGCGAGGCauucGCGUGCcGuCUGGCg -3'
miRNA:   3'- -GUGCG------CGUUCCGa---CGCGCG-CuGACCG- -5'
28092 3' -59.8 NC_005887.1 + 9568 0.67 0.346978
Target:  5'- gCGCGCGcCGAuccugcgcacgagccGGCUGCaugGCGCGcGCcGGCg -3'
miRNA:   3'- -GUGCGC-GUU---------------CCGACG---CGCGC-UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 9604 0.7 0.230199
Target:  5'- uUugGCGCAAucGGCuuUGCcugauGCGCGACcggUGGCu -3'
miRNA:   3'- -GugCGCGUU--CCG--ACG-----CGCGCUG---ACCG- -5'
28092 3' -59.8 NC_005887.1 + 9766 0.7 0.20727
Target:  5'- gCACGUGCAcuGGaacaUGCGCGUcacgcACUGGCg -3'
miRNA:   3'- -GUGCGCGUu-CCg---ACGCGCGc----UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 9902 0.68 0.304347
Target:  5'- -cCGCGCAGuGGCUGCGCaaccugaucGCcGCcGGCc -3'
miRNA:   3'- guGCGCGUU-CCGACGCG---------CGcUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 10032 0.68 0.282455
Target:  5'- gGCGUgugguccuacGCAcuGCgGCGCGcCGGCUGGCc -3'
miRNA:   3'- gUGCG----------CGUucCGaCGCGC-GCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 10949 0.7 0.230199
Target:  5'- uUACGCGCAGcuGUUGUGCGCGuccacgcaaucgGCUGGa -3'
miRNA:   3'- -GUGCGCGUUc-CGACGCGCGC------------UGACCg -5'
28092 3' -59.8 NC_005887.1 + 11101 0.75 0.090764
Target:  5'- --gGCGCAucGGCuggUGCGCGCGaaGCUGGCc -3'
miRNA:   3'- gugCGCGUu-CCG---ACGCGCGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 12147 0.67 0.327518
Target:  5'- uCGCGCGCcagauuGGUgacgauCGCGUGACgUGGCu -3'
miRNA:   3'- -GUGCGCGuu----CCGac----GCGCGCUG-ACCG- -5'
28092 3' -59.8 NC_005887.1 + 12624 0.71 0.171425
Target:  5'- gCACGCGCGGcGCgugauccUGCGaCGCGAC-GGCg -3'
miRNA:   3'- -GUGCGCGUUcCG-------ACGC-GCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 12693 0.7 0.218477
Target:  5'- uCGCGuUGCAGGGUcacGCGCGCacGCUGGUc -3'
miRNA:   3'- -GUGC-GCGUUCCGa--CGCGCGc-UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 13385 0.67 0.351971
Target:  5'- -uCGCGCugAAGGCcgGCGCGgCgGACgucGGCg -3'
miRNA:   3'- guGCGCG--UUCCGa-CGCGC-G-CUGa--CCG- -5'
28092 3' -59.8 NC_005887.1 + 13585 0.67 0.335527
Target:  5'- gACGCGaagGAGGCcGCGUacuucaucGCuGCUGGCa -3'
miRNA:   3'- gUGCGCg--UUCCGaCGCG--------CGcUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 13944 0.71 0.190882
Target:  5'- gCGCGCGCucGGCugcgacgUGCGCGUGACgacaGCc -3'
miRNA:   3'- -GUGCGCGuuCCG-------ACGCGCGCUGac--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.