Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28092 | 3' | -59.8 | NC_005887.1 | + | 19475 | 0.71 | 0.186341 |
Target: 5'- aGCGCGCGAGGauCUGauaGCGGCcGGCg -3' miRNA: 3'- gUGCGCGUUCC--GACgcgCGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 27022 | 0.71 | 0.186341 |
Target: 5'- -gUGCGCAAccucGGCgaGCGCGCGACcGcGCa -3' miRNA: 3'- guGCGCGUU----CCGa-CGCGCGCUGaC-CG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 38633 | 0.71 | 0.186341 |
Target: 5'- uGCGCGgAucGCggucgGCGCGCGGCUcgacGGCg -3' miRNA: 3'- gUGCGCgUucCGa----CGCGCGCUGA----CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 34916 | 0.71 | 0.189864 |
Target: 5'- gACGCGCAcgccagcccaaacgAGGCggcgGCggGUGCGACcgUGGCg -3' miRNA: 3'- gUGCGCGU--------------UCCGa---CG--CGCGCUG--ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 13944 | 0.71 | 0.190882 |
Target: 5'- gCGCGCGCucGGCugcgacgUGCGCGUGACgacaGCc -3' miRNA: 3'- -GUGCGCGuuCCG-------ACGCGCGCUGac--CG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 8325 | 0.71 | 0.191392 |
Target: 5'- aCGCGCuguuucGCGAGGCauucGCGUGCcGuCUGGCg -3' miRNA: 3'- -GUGCG------CGUUCCGa---CGCGCG-CuGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 27348 | 0.71 | 0.191392 |
Target: 5'- cCACGCGCA--GCgGCGCGCaGACgagcgucGGCa -3' miRNA: 3'- -GUGCGCGUucCGaCGCGCG-CUGa------CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 38218 | 0.71 | 0.196562 |
Target: 5'- uCGCGCGCAGccUUGCGCGUGGCcGGg -3' miRNA: 3'- -GUGCGCGUUccGACGCGCGCUGaCCg -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 32505 | 0.7 | 0.201855 |
Target: 5'- gGCGCGCGgcguucAGGUUGgcCGCGCuGACcGGCu -3' miRNA: 3'- gUGCGCGU------UCCGAC--GCGCG-CUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 9766 | 0.7 | 0.20727 |
Target: 5'- gCACGUGCAcuGGaacaUGCGCGUcacgcACUGGCg -3' miRNA: 3'- -GUGCGCGUu-CCg---ACGCGCGc----UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 4214 | 0.7 | 0.218477 |
Target: 5'- gCGCGCGCAGGagaaaggcguGCUGCucGCGCcGACgcucGGCc -3' miRNA: 3'- -GUGCGCGUUC----------CGACG--CGCG-CUGa---CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 12693 | 0.7 | 0.218477 |
Target: 5'- uCGCGuUGCAGGGUcacGCGCGCacGCUGGUc -3' miRNA: 3'- -GUGC-GCGUUCCGa--CGCGCGc-UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 1488 | 0.7 | 0.218477 |
Target: 5'- gGCGUGCGGcGCU-CGCGCGGCgcGGCc -3' miRNA: 3'- gUGCGCGUUcCGAcGCGCGCUGa-CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 38077 | 0.7 | 0.222521 |
Target: 5'- uCGCGCGCGaucaucGGGCcgagcaguucagacUGCGUGCGGCcGaGCg -3' miRNA: 3'- -GUGCGCGU------UCCG--------------ACGCGCGCUGaC-CG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 14528 | 0.7 | 0.230199 |
Target: 5'- gCAgGCGCGGccgucGGCgGCGCGuCGAUcGGCa -3' miRNA: 3'- -GUgCGCGUU-----CCGaCGCGC-GCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 10949 | 0.7 | 0.230199 |
Target: 5'- uUACGCGCAGcuGUUGUGCGCGuccacgcaaucgGCUGGa -3' miRNA: 3'- -GUGCGCGUUc-CGACGCGCGC------------UGACCg -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 9604 | 0.7 | 0.230199 |
Target: 5'- uUugGCGCAAucGGCuuUGCcugauGCGCGACcggUGGCu -3' miRNA: 3'- -GugCGCGUU--CCG--ACG-----CGCGCUG---ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 17159 | 0.69 | 0.236256 |
Target: 5'- gGCGaagauCGCGAGGCgugggaGCGCGCGAacgcGGCc -3' miRNA: 3'- gUGC-----GCGUUCCGa-----CGCGCGCUga--CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 35749 | 0.69 | 0.236256 |
Target: 5'- cCACuCGCucGGCUucucguucaCGCGCGGCUGGUg -3' miRNA: 3'- -GUGcGCGuuCCGAc--------GCGCGCUGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 1985 | 0.69 | 0.236256 |
Target: 5'- uCGCGCGCGAcggcggcacGGCcGCGCuCGAC-GGCc -3' miRNA: 3'- -GUGCGCGUU---------CCGaCGCGcGCUGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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