miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 4135 1.1 0.000184
Target:  5'- cCACGCGCAAGGCUGCGCGCGACUGGCu -3'
miRNA:   3'- -GUGCGCGUUCCGACGCGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 30776 0.76 0.081006
Target:  5'- gCGCGCgGCGAGuuccuuCUGCGCGCGAUcaaUGGCg -3'
miRNA:   3'- -GUGCG-CGUUCc-----GACGCGCGCUG---ACCG- -5'
28092 3' -59.8 NC_005887.1 + 11101 0.75 0.090764
Target:  5'- --gGCGCAucGGCuggUGCGCGCGaaGCUGGCc -3'
miRNA:   3'- gugCGCGUu-CCG---ACGCGCGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 22605 0.74 0.104533
Target:  5'- uGCGUGUGGaucGCUGCGCGCGucgccuACUGGCa -3'
miRNA:   3'- gUGCGCGUUc--CGACGCGCGC------UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 15008 0.74 0.113715
Target:  5'- uGCGCGCc--GCUGCGCGUGGCgcagucgacgUGGCc -3'
miRNA:   3'- gUGCGCGuucCGACGCGCGCUG----------ACCG- -5'
28092 3' -59.8 NC_005887.1 + 41354 0.74 0.120249
Target:  5'- gCGCGCGCAcGGCgGCcggcaauuuGCGCGugUcGGCg -3'
miRNA:   3'- -GUGCGCGUuCCGaCG---------CGCGCugA-CCG- -5'
28092 3' -59.8 NC_005887.1 + 17398 0.73 0.127132
Target:  5'- cCGCGCGCAAGGCggcccGCGCGCaccGCgucGCg -3'
miRNA:   3'- -GUGCGCGUUCCGa----CGCGCGc--UGac-CG- -5'
28092 3' -59.8 NC_005887.1 + 14695 0.73 0.130708
Target:  5'- cCGCGCGCGcGGCagcucaGCGCGCacaACUGGUa -3'
miRNA:   3'- -GUGCGCGUuCCGa-----CGCGCGc--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 17610 0.73 0.134377
Target:  5'- uCGCGCGCAAGauggaaacGCUGCGCaCGAC-GGUc -3'
miRNA:   3'- -GUGCGCGUUC--------CGACGCGcGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 24952 0.73 0.138141
Target:  5'- uGCGCGC-GGGCcgccuUGCGCGCGGCc-GCg -3'
miRNA:   3'- gUGCGCGuUCCG-----ACGCGCGCUGacCG- -5'
28092 3' -59.8 NC_005887.1 + 2631 0.73 0.142001
Target:  5'- aACGCGCGAGGaugagGUG-GCGGCgGGCa -3'
miRNA:   3'- gUGCGCGUUCCga---CGCgCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 26221 0.73 0.142001
Target:  5'- gUugGCGgGGuGGUUGCGCGCGGCgcaGCg -3'
miRNA:   3'- -GugCGCgUU-CCGACGCGCGCUGac-CG- -5'
28092 3' -59.8 NC_005887.1 + 41804 0.73 0.142001
Target:  5'- uCGCGCuGUAuccGGCgcgGCGCGCGGC-GGCc -3'
miRNA:   3'- -GUGCG-CGUu--CCGa--CGCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 41910 0.72 0.152921
Target:  5'- aCACGCGCAgaGGGUUcgagcgcagcaacaGCGgGCGGCgcGGCg -3'
miRNA:   3'- -GUGCGCGU--UCCGA--------------CGCgCGCUGa-CCG- -5'
28092 3' -59.8 NC_005887.1 + 27682 0.72 0.158014
Target:  5'- -uCGUGCGGGGCaGCGUcgaaccgGCGACgGGCa -3'
miRNA:   3'- guGCGCGUUCCGaCGCG-------CGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 15867 0.72 0.169121
Target:  5'- cCGCGCGCAgcAGGCgcaccagcagcucggUGCGCucgacGCGcaGCUGGCc -3'
miRNA:   3'- -GUGCGCGU--UCCG---------------ACGCG-----CGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 12624 0.71 0.171425
Target:  5'- gCACGCGCGGcGCgugauccUGCGaCGCGAC-GGCg -3'
miRNA:   3'- -GUGCGCGUUcCG-------ACGC-GCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 989 0.71 0.171889
Target:  5'- aCACGCGCAAuugccGGCcgccgUGCGCGCGcuguacACcGGCu -3'
miRNA:   3'- -GUGCGCGUU-----CCG-----ACGCGCGC------UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 16456 0.71 0.181408
Target:  5'- uGCGCGC-GGGCaUGCGCuCGACcgcgcGGCa -3'
miRNA:   3'- gUGCGCGuUCCG-ACGCGcGCUGa----CCG- -5'
28092 3' -59.8 NC_005887.1 + 5723 0.71 0.181409
Target:  5'- gACGCGCAGGaGaagGCGCGCGAU--GCa -3'
miRNA:   3'- gUGCGCGUUC-Cga-CGCGCGCUGacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.