miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 35749 0.69 0.236256
Target:  5'- cCACuCGCucGGCUucucguucaCGCGCGGCUGGUg -3'
miRNA:   3'- -GUGcGCGuuCCGAc--------GCGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 4214 0.7 0.218477
Target:  5'- gCGCGCGCAGGagaaaggcguGCUGCucGCGCcGACgcucGGCc -3'
miRNA:   3'- -GUGCGCGUUC----------CGACG--CGCG-CUGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 12693 0.7 0.218477
Target:  5'- uCGCGuUGCAGGGUcacGCGCGCacGCUGGUc -3'
miRNA:   3'- -GUGC-GCGUUCCGa--CGCGCGc-UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 1488 0.7 0.218477
Target:  5'- gGCGUGCGGcGCU-CGCGCGGCgcGGCc -3'
miRNA:   3'- gUGCGCGUUcCGAcGCGCGCUGa-CCG- -5'
28092 3' -59.8 NC_005887.1 + 10949 0.7 0.230199
Target:  5'- uUACGCGCAGcuGUUGUGCGCGuccacgcaaucgGCUGGa -3'
miRNA:   3'- -GUGCGCGUUc-CGACGCGCGC------------UGACCg -5'
28092 3' -59.8 NC_005887.1 + 14528 0.7 0.230199
Target:  5'- gCAgGCGCGGccgucGGCgGCGCGuCGAUcGGCa -3'
miRNA:   3'- -GUgCGCGUU-----CCGaCGCGC-GCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 9604 0.7 0.230199
Target:  5'- uUugGCGCAAucGGCuuUGCcugauGCGCGACcggUGGCu -3'
miRNA:   3'- -GugCGCGUU--CCG--ACG-----CGCGCUG---ACCG- -5'
28092 3' -59.8 NC_005887.1 + 4665 0.69 0.236256
Target:  5'- gACGCGCAGaccGCUGCGCaGaCGGCgagGGUc -3'
miRNA:   3'- gUGCGCGUUc--CGACGCG-C-GCUGa--CCG- -5'
28092 3' -59.8 NC_005887.1 + 17159 0.69 0.236256
Target:  5'- gGCGaagauCGCGAGGCgugggaGCGCGCGAacgcGGCc -3'
miRNA:   3'- gUGC-----GCGUUCCGa-----CGCGCGCUga--CCG- -5'
28092 3' -59.8 NC_005887.1 + 38218 0.71 0.196562
Target:  5'- uCGCGCGCAGccUUGCGCGUGGCcGGg -3'
miRNA:   3'- -GUGCGCGUUccGACGCGCGCUGaCCg -5'
28092 3' -59.8 NC_005887.1 + 27348 0.71 0.191392
Target:  5'- cCACGCGCA--GCgGCGCGCaGACgagcgucGGCa -3'
miRNA:   3'- -GUGCGCGUucCGaCGCGCG-CUGa------CCG- -5'
28092 3' -59.8 NC_005887.1 + 8325 0.71 0.191392
Target:  5'- aCGCGCuguuucGCGAGGCauucGCGUGCcGuCUGGCg -3'
miRNA:   3'- -GUGCG------CGUUCCGa---CGCGCG-CuGACCG- -5'
28092 3' -59.8 NC_005887.1 + 11101 0.75 0.090764
Target:  5'- --gGCGCAucGGCuggUGCGCGCGaaGCUGGCc -3'
miRNA:   3'- gugCGCGUu-CCG---ACGCGCGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 22605 0.74 0.104533
Target:  5'- uGCGUGUGGaucGCUGCGCGCGucgccuACUGGCa -3'
miRNA:   3'- gUGCGCGUUc--CGACGCGCGC------UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 17610 0.73 0.134377
Target:  5'- uCGCGCGCAAGauggaaacGCUGCGCaCGAC-GGUc -3'
miRNA:   3'- -GUGCGCGUUC--------CGACGCGcGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 24952 0.73 0.138141
Target:  5'- uGCGCGC-GGGCcgccuUGCGCGCGGCc-GCg -3'
miRNA:   3'- gUGCGCGuUCCG-----ACGCGCGCUGacCG- -5'
28092 3' -59.8 NC_005887.1 + 15867 0.72 0.169121
Target:  5'- cCGCGCGCAgcAGGCgcaccagcagcucggUGCGCucgacGCGcaGCUGGCc -3'
miRNA:   3'- -GUGCGCGU--UCCG---------------ACGCG-----CGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 989 0.71 0.171889
Target:  5'- aCACGCGCAAuugccGGCcgccgUGCGCGCGcuguacACcGGCu -3'
miRNA:   3'- -GUGCGCGUU-----CCG-----ACGCGCGC------UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 16456 0.71 0.181408
Target:  5'- uGCGCGC-GGGCaUGCGCuCGACcgcgcGGCa -3'
miRNA:   3'- gUGCGCGuUCCG-ACGCGcGCUGa----CCG- -5'
28092 3' -59.8 NC_005887.1 + 27022 0.71 0.186341
Target:  5'- -gUGCGCAAccucGGCgaGCGCGCGACcGcGCa -3'
miRNA:   3'- guGCGCGUU----CCGa-CGCGCGCUGaC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.