miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 37070 0.66 0.413893
Target:  5'- cCGCGCGCu--GCU-CGgGCGACUGcGUu -3'
miRNA:   3'- -GUGCGCGuucCGAcGCgCGCUGAC-CG- -5'
28092 3' -59.8 NC_005887.1 + 1676 0.66 0.368977
Target:  5'- gCGCGCGCcAGGUgcagGaugGUGCGGCcGGUg -3'
miRNA:   3'- -GUGCGCGuUCCGa---Cg--CGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 30219 0.67 0.335527
Target:  5'- gGCGCGCGAcGGCgGCcuGCuCGucCUGGCg -3'
miRNA:   3'- gUGCGCGUU-CCGaCG--CGcGCu-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 4135 1.1 0.000184
Target:  5'- cCACGCGCAAGGCUGCGCGCGACUGGCu -3'
miRNA:   3'- -GUGCGCGUUCCGACGCGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 30620 0.66 0.404642
Target:  5'- uGCGUGCAuucguGcGCgccgUGCGCGCGGCgaaGCg -3'
miRNA:   3'- gUGCGCGUu----C-CG----ACGCGCGCUGac-CG- -5'
28092 3' -59.8 NC_005887.1 + 25044 0.66 0.404642
Target:  5'- gCACGCGguGcgccgaaccGGCguuUGCGCGCG-C-GGCg -3'
miRNA:   3'- -GUGCGCguU---------CCG---ACGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 17312 0.66 0.386539
Target:  5'- uGCG-GCAuGGGUucUGCGCuacCGGCUGGCc -3'
miRNA:   3'- gUGCgCGU-UCCG--ACGCGc--GCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 1413 0.66 0.38387
Target:  5'- gCAUGCGCucGGCguugccgaacucggUGCGCGCG-C-GGUa -3'
miRNA:   3'- -GUGCGCGuuCCG--------------ACGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 15328 0.66 0.377689
Target:  5'- uCGCGCGCucgccGAGGUUGCGCacaCGAa-GGUg -3'
miRNA:   3'- -GUGCGCG-----UUCCGACGCGc--GCUgaCCG- -5'
28092 3' -59.8 NC_005887.1 + 2202 0.66 0.368977
Target:  5'- aCACGCgGCGAGcGCgGCGCGCaGC-GcGCa -3'
miRNA:   3'- -GUGCG-CGUUC-CGaCGCGCGcUGaC-CG- -5'
28092 3' -59.8 NC_005887.1 + 6304 0.66 0.375936
Target:  5'- aGCGCGuCGAGGCcuUGCGCcucgccgGCGccgaggugacgcuGCUGGUu -3'
miRNA:   3'- gUGCGC-GUUCCG--ACGCG-------CGC-------------UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 37690 0.66 0.377689
Target:  5'- -cUGCGCAGcGGuCUGCGCGUcGCUGa- -3'
miRNA:   3'- guGCGCGUU-CC-GACGCGCGcUGACcg -5'
28092 3' -59.8 NC_005887.1 + 37561 0.66 0.404642
Target:  5'- cCGCGaGCAcGGCcuCGC-CGGCUGGCg -3'
miRNA:   3'- -GUGCgCGUuCCGacGCGcGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 25821 0.66 0.368977
Target:  5'- gACGCGCccacucGGCgccggcgGCGaCGCGAUcGGCc -3'
miRNA:   3'- gUGCGCGuu----CCGa------CGC-GCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 24332 0.66 0.404642
Target:  5'- gGCGCGCGuaa--GCGCGCGGC-GGUc -3'
miRNA:   3'- gUGCGCGUuccgaCGCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 39916 0.66 0.377689
Target:  5'- aGCGCGCGAGGUgucauucgucgGCGCG-GGCUucGCc -3'
miRNA:   3'- gUGCGCGUUCCGa----------CGCGCgCUGAc-CG- -5'
28092 3' -59.8 NC_005887.1 + 34256 0.66 0.368977
Target:  5'- aGCGCgGCGA-GCUGCGCGCGcGCUu-- -3'
miRNA:   3'- gUGCG-CGUUcCGACGCGCGC-UGAccg -5'
28092 3' -59.8 NC_005887.1 + 9568 0.67 0.346978
Target:  5'- gCGCGCGcCGAuccugcgcacgagccGGCUGCaugGCGCGcGCcGGCg -3'
miRNA:   3'- -GUGCGC-GUU---------------CCGACG---CGCGC-UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 17775 0.66 0.404642
Target:  5'- cCAUGCGCAGGugugaaGCUGaCG-GCGAUcaugGGCg -3'
miRNA:   3'- -GUGCGCGUUC------CGAC-GCgCGCUGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 26527 0.66 0.395524
Target:  5'- -cCGCGCAAGcGCUGCaccuGCGCcucguggucaguGACUGccGCa -3'
miRNA:   3'- guGCGCGUUC-CGACG----CGCG------------CUGAC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.