miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 989 0.71 0.171889
Target:  5'- aCACGCGCAAuugccGGCcgccgUGCGCGCGcuguacACcGGCu -3'
miRNA:   3'- -GUGCGCGUU-----CCG-----ACGCGCGC------UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 1413 0.66 0.38387
Target:  5'- gCAUGCGCucGGCguugccgaacucggUGCGCGCG-C-GGUa -3'
miRNA:   3'- -GUGCGCGuuCCG--------------ACGCGCGCuGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 1488 0.7 0.218477
Target:  5'- gGCGUGCGGcGCU-CGCGCGGCgcGGCc -3'
miRNA:   3'- gUGCGCGUUcCGAcGCGCGCUGa-CCG- -5'
28092 3' -59.8 NC_005887.1 + 1581 0.67 0.335527
Target:  5'- -cCGCcgGCucGGCgGCGCGCGGCgcgccaacGGCg -3'
miRNA:   3'- guGCG--CGuuCCGaCGCGCGCUGa-------CCG- -5'
28092 3' -59.8 NC_005887.1 + 1676 0.66 0.368977
Target:  5'- gCGCGCGCcAGGUgcagGaugGUGCGGCcGGUg -3'
miRNA:   3'- -GUGCGCGuUCCGa---Cg--CGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 1985 0.69 0.236256
Target:  5'- uCGCGCGCGAcggcggcacGGCcGCGCuCGAC-GGCc -3'
miRNA:   3'- -GUGCGCGUU---------CCGaCGCGcGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 2191 0.68 0.28961
Target:  5'- gGC-CGCGgugaucGGGCaGCGCaaaccgauggGCGGCUGGCg -3'
miRNA:   3'- gUGcGCGU------UCCGaCGCG----------CGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 2202 0.66 0.368977
Target:  5'- aCACGCgGCGAGcGCgGCGCGCaGC-GcGCa -3'
miRNA:   3'- -GUGCG-CGUUC-CGaCGCGCGcUGaC-CG- -5'
28092 3' -59.8 NC_005887.1 + 2385 0.67 0.327518
Target:  5'- aCACGcCGUuccGGaucCUGCGUGCcGCUGGCu -3'
miRNA:   3'- -GUGC-GCGuu-CC---GACGCGCGcUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 2483 0.68 0.307362
Target:  5'- gAUGCGCGAGGCgcucagcgGUgagcggucgauugauGUGCGAC-GGCg -3'
miRNA:   3'- gUGCGCGUUCCGa-------CG---------------CGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 2534 0.68 0.296907
Target:  5'- aCGCuGCGCAAGGCgcUGuCGgGCGGCUacuGCu -3'
miRNA:   3'- -GUG-CGCGUUCCG--AC-GCgCGCUGAc--CG- -5'
28092 3' -59.8 NC_005887.1 + 2631 0.73 0.142001
Target:  5'- aACGCGCGAGGaugagGUG-GCGGCgGGCa -3'
miRNA:   3'- gUGCGCGUUCCga---CGCgCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 3388 0.66 0.404642
Target:  5'- -gUGCGCAc-GCUGUucgccGCGCGcuaccGCUGGCa -3'
miRNA:   3'- guGCGCGUucCGACG-----CGCGC-----UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 4135 1.1 0.000184
Target:  5'- cCACGCGCAAGGCUGCGCGCGACUGGCu -3'
miRNA:   3'- -GUGCGCGUUCCGACGCGCGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 4214 0.7 0.218477
Target:  5'- gCGCGCGCAGGagaaaggcguGCUGCucGCGCcGACgcucGGCc -3'
miRNA:   3'- -GUGCGCGUUC----------CGACG--CGCG-CUGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 4400 0.68 0.282455
Target:  5'- gGCGCGUAacggaugcGGGCUGauucaacaaCGCGCGccuGCUGGg -3'
miRNA:   3'- gUGCGCGU--------UCCGAC---------GCGCGC---UGACCg -5'
28092 3' -59.8 NC_005887.1 + 4405 0.66 0.385648
Target:  5'- uGCGCGCc-GGCgaagGCGCgGCGAUccugcaaUGGUu -3'
miRNA:   3'- gUGCGCGuuCCGa---CGCG-CGCUG-------ACCG- -5'
28092 3' -59.8 NC_005887.1 + 4665 0.69 0.236256
Target:  5'- gACGCGCAGaccGCUGCGCaGaCGGCgagGGUc -3'
miRNA:   3'- gUGCGCGUUc--CGACGCG-C-GCUGa--CCG- -5'
28092 3' -59.8 NC_005887.1 + 5349 0.69 0.268565
Target:  5'- -uCGCGUAcGGcCUGCGCGUGcucGCcGGCg -3'
miRNA:   3'- guGCGCGUuCC-GACGCGCGC---UGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 5396 0.67 0.349468
Target:  5'- --aGCGCGaccggugaaccggcGGGCgGCGCcgcaGCGACcGGCg -3'
miRNA:   3'- gugCGCGU--------------UCCGaCGCG----CGCUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.