miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28092 3' -59.8 NC_005887.1 + 42140 0.67 0.322781
Target:  5'- gGCGCGCAuucgcagagcagcgGGGCgaacugcgauuuauUGCgaauucGCGCGcGCUGGCu -3'
miRNA:   3'- gUGCGCGU--------------UCCG--------------ACG------CGCGC-UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 41910 0.72 0.152921
Target:  5'- aCACGCGCAgaGGGUUcgagcgcagcaacaGCGgGCGGCgcGGCg -3'
miRNA:   3'- -GUGCGCGU--UCCGA--------------CGCgCGCUGa-CCG- -5'
28092 3' -59.8 NC_005887.1 + 41804 0.73 0.142001
Target:  5'- uCGCGCuGUAuccGGCgcgGCGCGCGGC-GGCc -3'
miRNA:   3'- -GUGCG-CGUu--CCGa--CGCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 41354 0.74 0.120249
Target:  5'- gCGCGCGCAcGGCgGCcggcaauuuGCGCGugUcGGCg -3'
miRNA:   3'- -GUGCGCGUuCCGaCG---------CGCGCugA-CCG- -5'
28092 3' -59.8 NC_005887.1 + 40688 0.67 0.327518
Target:  5'- cCugGCGC---GC-GCGCaCGGCUGGCa -3'
miRNA:   3'- -GugCGCGuucCGaCGCGcGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 40528 0.69 0.261829
Target:  5'- aCGCgGCGCGcGGCaGCGaCGaCGGuCUGGCg -3'
miRNA:   3'- -GUG-CGCGUuCCGaCGC-GC-GCU-GACCG- -5'
28092 3' -59.8 NC_005887.1 + 40165 0.66 0.413893
Target:  5'- cCGCGUGUGA-GCUGCGCGaCGGCacgaagGGa -3'
miRNA:   3'- -GUGCGCGUUcCGACGCGC-GCUGa-----CCg -5'
28092 3' -59.8 NC_005887.1 + 39916 0.66 0.377689
Target:  5'- aGCGCGCGAGGUgucauucgucgGCGCG-GGCUucGCc -3'
miRNA:   3'- gUGCGCGUUCCGa----------CGCGCgCUGAc-CG- -5'
28092 3' -59.8 NC_005887.1 + 39532 0.68 0.308878
Target:  5'- aCugGCGCc-GGCUcuguaccccaaucCGCGCGACgGGCu -3'
miRNA:   3'- -GugCGCGuuCCGAc------------GCGCGCUGaCCG- -5'
28092 3' -59.8 NC_005887.1 + 38734 0.68 0.311928
Target:  5'- uCACG-GCcgAAGcGCUGCGCG-GcCUGGCg -3'
miRNA:   3'- -GUGCgCG--UUC-CGACGCGCgCuGACCG- -5'
28092 3' -59.8 NC_005887.1 + 38633 0.71 0.186341
Target:  5'- uGCGCGgAucGCggucgGCGCGCGGCUcgacGGCg -3'
miRNA:   3'- gUGCGCgUucCGa----CGCGCGCUGA----CCG- -5'
28092 3' -59.8 NC_005887.1 + 38528 0.66 0.377689
Target:  5'- gGCGgGUAGGGUggGCGCuuacaccagcggGCGccACUGGCc -3'
miRNA:   3'- gUGCgCGUUCCGa-CGCG------------CGC--UGACCG- -5'
28092 3' -59.8 NC_005887.1 + 38218 0.71 0.196562
Target:  5'- uCGCGCGCAGccUUGCGCGUGGCcGGg -3'
miRNA:   3'- -GUGCGCGUUccGACGCGCGCUGaCCg -5'
28092 3' -59.8 NC_005887.1 + 38169 0.66 0.404642
Target:  5'- aGCGCGaaauAGGCgGUGUGCaGCaUGGCc -3'
miRNA:   3'- gUGCGCgu--UCCGaCGCGCGcUG-ACCG- -5'
28092 3' -59.8 NC_005887.1 + 38077 0.7 0.222521
Target:  5'- uCGCGCGCGaucaucGGGCcgagcaguucagacUGCGUGCGGCcGaGCg -3'
miRNA:   3'- -GUGCGCGU------UCCG--------------ACGCGCGCUGaC-CG- -5'
28092 3' -59.8 NC_005887.1 + 37860 0.68 0.311928
Target:  5'- gACGCGCGA---UGCGCGCGcCguucGGCa -3'
miRNA:   3'- gUGCGCGUUccgACGCGCGCuGa---CCG- -5'
28092 3' -59.8 NC_005887.1 + 37690 0.66 0.377689
Target:  5'- -cUGCGCAGcGGuCUGCGCGUcGCUGa- -3'
miRNA:   3'- guGCGCGUU-CC-GACGCGCGcUGACcg -5'
28092 3' -59.8 NC_005887.1 + 37561 0.66 0.404642
Target:  5'- cCGCGaGCAcGGCcuCGC-CGGCUGGCg -3'
miRNA:   3'- -GUGCgCGUuCCGacGCGcGCUGACCG- -5'
28092 3' -59.8 NC_005887.1 + 37070 0.66 0.413893
Target:  5'- cCGCGCGCu--GCU-CGgGCGACUGcGUu -3'
miRNA:   3'- -GUGCGCGuucCGAcGCgCGCUGAC-CG- -5'
28092 3' -59.8 NC_005887.1 + 37005 0.66 0.385648
Target:  5'- gCACGCGC-AGGCcGUaCGCGAacacgucgggauaCUGGUc -3'
miRNA:   3'- -GUGCGCGuUCCGaCGcGCGCU-------------GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.