Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28092 | 3' | -59.8 | NC_005887.1 | + | 28403 | 0.66 | 0.404642 |
Target: 5'- uCACGCGCAcgucgcaGCcgaGCGCGCG-CaGGCg -3' miRNA: 3'- -GUGCGCGUuc-----CGa--CGCGCGCuGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 37690 | 0.66 | 0.377689 |
Target: 5'- -cUGCGCAGcGGuCUGCGCGUcGCUGa- -3' miRNA: 3'- guGCGCGUU-CC-GACGCGCGcUGACcg -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 6304 | 0.66 | 0.375936 |
Target: 5'- aGCGCGuCGAGGCcuUGCGCcucgccgGCGccgaggugacgcuGCUGGUu -3' miRNA: 3'- gUGCGC-GUUCCG--ACGCG-------CGC-------------UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 6782 | 0.66 | 0.368977 |
Target: 5'- gCACGCacuaCAAgugggacaucGGCcucacGCuGCGCGACUGGCg -3' miRNA: 3'- -GUGCGc---GUU----------CCGa----CG-CGCGCUGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 4405 | 0.66 | 0.385648 |
Target: 5'- uGCGCGCc-GGCgaagGCGCgGCGAUccugcaaUGGUu -3' miRNA: 3'- gUGCGCGuuCCGa---CGCG-CGCUG-------ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 30462 | 0.66 | 0.368977 |
Target: 5'- -cCGgGCuggaacAGGCgGUGCGCGACgcGGCc -3' miRNA: 3'- guGCgCGu-----UCCGaCGCGCGCUGa-CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 23258 | 0.66 | 0.377689 |
Target: 5'- gGCGCGCAaaAGGCgcaGCuCGUGGC-GGUu -3' miRNA: 3'- gUGCGCGU--UCCGa--CGcGCGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 31384 | 0.66 | 0.377689 |
Target: 5'- gACGCGCucGGCguagcgGUGCGUGcCgUGGUu -3' miRNA: 3'- gUGCGCGuuCCGa-----CGCGCGCuG-ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 38528 | 0.66 | 0.377689 |
Target: 5'- gGCGgGUAGGGUggGCGCuuacaccagcggGCGccACUGGCc -3' miRNA: 3'- gUGCgCGUUCCGa-CGCG------------CGC--UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 14707 | 0.66 | 0.377689 |
Target: 5'- gGCGgGC-GGGCcGgGCGCGGCgaucgcgcaGGCg -3' miRNA: 3'- gUGCgCGuUCCGaCgCGCGCUGa--------CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 23507 | 0.66 | 0.392814 |
Target: 5'- gACGUGUucGGCcGCGCugacgaacgcgcggGUGAgCUGGCa -3' miRNA: 3'- gUGCGCGuuCCGaCGCG--------------CGCU-GACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 29521 | 0.66 | 0.395524 |
Target: 5'- gGCGCGUuguAGaacagcacGUcGCGCGCGACggccUGGCa -3' miRNA: 3'- gUGCGCGu--UC--------CGaCGCGCGCUG----ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 3388 | 0.66 | 0.404642 |
Target: 5'- -gUGCGCAc-GCUGUucgccGCGCGcuaccGCUGGCa -3' miRNA: 3'- guGCGCGUucCGACG-----CGCGC-----UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 37005 | 0.66 | 0.385648 |
Target: 5'- gCACGCGC-AGGCcGUaCGCGAacacgucgggauaCUGGUc -3' miRNA: 3'- -GUGCGCGuUCCGaCGcGCGCU-------------GACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 22250 | 0.66 | 0.386539 |
Target: 5'- uCACGaucaGCGAcGGUgGCGCGCaGCaGGCg -3' miRNA: 3'- -GUGCg---CGUU-CCGaCGCGCGcUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 7107 | 0.66 | 0.404642 |
Target: 5'- uCGCGCGUggucuaacGAGGCgggGCgGCGCuGC-GGCg -3' miRNA: 3'- -GUGCGCG--------UUCCGa--CG-CGCGcUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 31184 | 0.66 | 0.386539 |
Target: 5'- -uUGUGCucGGGCaUGCGCGCGuagauuuCgGGCg -3' miRNA: 3'- guGCGCGu-UCCG-ACGCGCGCu------GaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 21269 | 0.67 | 0.335527 |
Target: 5'- gCAC-CGCGGcGGCgGCGUauGCGcuGCUGGCg -3' miRNA: 3'- -GUGcGCGUU-CCGaCGCG--CGC--UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 17198 | 0.67 | 0.360404 |
Target: 5'- gCACGCgGCAAuGUUGCGCcgcgcaagcaggGCGugUGGg -3' miRNA: 3'- -GUGCG-CGUUcCGACGCG------------CGCugACCg -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 28084 | 0.67 | 0.335527 |
Target: 5'- uCACGCuGCAugccguuuaccgGGGCgUGCGUGaCGGuCUGGUu -3' miRNA: 3'- -GUGCG-CGU------------UCCG-ACGCGC-GCU-GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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