miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28093 5' -52.3 NC_005887.1 + 1492 0.67 0.743732
Target:  5'- cGACgcGCGCGGcGGCuuCGccGGugGAUCCg -3'
miRNA:   3'- -CUGa-CGCGCCaCCGu-GC--UUugUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 3347 1.13 0.000705
Target:  5'- cGACUGCGCGGUGGCACGAAACAAUCCg -3'
miRNA:   3'- -CUGACGCGCCACCGUGCUUUGUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 4399 0.66 0.796249
Target:  5'- aGGCaaUGCGCGccGGCgaagGCGcgGCGAUCCu -3'
miRNA:   3'- -CUG--ACGCGCcaCCG----UGCuuUGUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 4625 0.67 0.72178
Target:  5'- cGCgGCGcCGGUGGCcgcCGgcGCGAUCa -3'
miRNA:   3'- cUGaCGC-GCCACCGu--GCuuUGUUAGg -5'
28093 5' -52.3 NC_005887.1 + 5607 0.66 0.806245
Target:  5'- uGCcGCGCGGcaucGGCACGAuuAACAucguUUCg -3'
miRNA:   3'- cUGaCGCGCCa---CCGUGCU--UUGUu---AGG- -5'
28093 5' -52.3 NC_005887.1 + 5902 0.66 0.816044
Target:  5'- cGCUGCG-GGcUGGC-CGAAggGCAAgaagCCg -3'
miRNA:   3'- cUGACGCgCC-ACCGuGCUU--UGUUa---GG- -5'
28093 5' -52.3 NC_005887.1 + 6812 0.7 0.574092
Target:  5'- cGCUGCGCGacuggcgcuacGUGGCGCGGGucuGCAacAUCg -3'
miRNA:   3'- cUGACGCGC-----------CACCGUGCUU---UGU--UAGg -5'
28093 5' -52.3 NC_005887.1 + 8407 0.68 0.715114
Target:  5'- aGGC-GCGUGGgccGaGCACGAccaggcuaucgccgcAGCGAUCCg -3'
miRNA:   3'- -CUGaCGCGCCa--C-CGUGCU---------------UUGUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 8551 0.66 0.816044
Target:  5'- ---cGCGUGGUGGC-CGug--GGUCCg -3'
miRNA:   3'- cugaCGCGCCACCGuGCuuugUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 10026 0.66 0.796249
Target:  5'- ---cGCGCGGccgcgcUGGCACGAAcaGCGgcAUCa -3'
miRNA:   3'- cugaCGCGCC------ACCGUGCUU--UGU--UAGg -5'
28093 5' -52.3 NC_005887.1 + 10756 0.79 0.174304
Target:  5'- gGACUgGCGCGGcgGGUACGAGggGCAGUCg -3'
miRNA:   3'- -CUGA-CGCGCCa-CCGUGCUU--UGUUAGg -5'
28093 5' -52.3 NC_005887.1 + 11096 0.67 0.731712
Target:  5'- cGCgugGCGCaucggcuGGUGcGCGCGAAGCuggCCg -3'
miRNA:   3'- cUGa--CGCG-------CCAC-CGUGCUUUGuuaGG- -5'
28093 5' -52.3 NC_005887.1 + 15015 0.67 0.732811
Target:  5'- cGCUGCGC-GUGGCGCagucGACGuggCCg -3'
miRNA:   3'- cUGACGCGcCACCGUGcu--UUGUua-GG- -5'
28093 5' -52.3 NC_005887.1 + 15269 0.68 0.685897
Target:  5'- uGCUGCGCGGcgagcguccgccGGCgaACGAGACug-CCg -3'
miRNA:   3'- cUGACGCGCCa-----------CCG--UGCUUUGuuaGG- -5'
28093 5' -52.3 NC_005887.1 + 17982 0.67 0.743732
Target:  5'- uGCaGCGCGGcucgUGGUucgucgccgACGAGACGGUCa -3'
miRNA:   3'- cUGaCGCGCC----ACCG---------UGCUUUGUUAGg -5'
28093 5' -52.3 NC_005887.1 + 22258 0.73 0.424198
Target:  5'- ---aGCGaCGGUGGCGCGcagcAGGCGAUCg -3'
miRNA:   3'- cugaCGC-GCCACCGUGC----UUUGUUAGg -5'
28093 5' -52.3 NC_005887.1 + 22975 0.68 0.676821
Target:  5'- aGCUGCGCGaGcaUGGCGCGuuGCcgcuGAUCg -3'
miRNA:   3'- cUGACGCGC-C--ACCGUGCuuUG----UUAGg -5'
28093 5' -52.3 NC_005887.1 + 23125 0.69 0.619673
Target:  5'- uGGCUG-GCGGUgaGGUgacgGCGuGACGAUCCu -3'
miRNA:   3'- -CUGACgCGCCA--CCG----UGCuUUGUUAGG- -5'
28093 5' -52.3 NC_005887.1 + 23455 0.66 0.775712
Target:  5'- gGGCUGC-CGGUgccgGGCGaccaGAAAUAAUCg -3'
miRNA:   3'- -CUGACGcGCCA----CCGUg---CUUUGUUAGg -5'
28093 5' -52.3 NC_005887.1 + 23693 0.69 0.650585
Target:  5'- aGACUGCGCGcagcGGCugGAAcagcgucgacagcaGCGggCCg -3'
miRNA:   3'- -CUGACGCGCca--CCGugCUU--------------UGUuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.