Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28093 | 5' | -52.3 | NC_005887.1 | + | 4399 | 0.66 | 0.796249 |
Target: 5'- aGGCaaUGCGCGccGGCgaagGCGcgGCGAUCCu -3' miRNA: 3'- -CUG--ACGCGCcaCCG----UGCuuUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 15269 | 0.68 | 0.685897 |
Target: 5'- uGCUGCGCGGcgagcguccgccGGCgaACGAGACug-CCg -3' miRNA: 3'- cUGACGCGCCa-----------CCG--UGCUUUGuuaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 34388 | 0.68 | 0.688161 |
Target: 5'- ---aGUGCGGccgGGCGCGAGGCccggCCu -3' miRNA: 3'- cugaCGCGCCa--CCGUGCUUUGuua-GG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 8407 | 0.68 | 0.715114 |
Target: 5'- aGGC-GCGUGGgccGaGCACGAccaggcuaucgccgcAGCGAUCCg -3' miRNA: 3'- -CUGaCGCGCCa--C-CGUGCU---------------UUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 4625 | 0.67 | 0.72178 |
Target: 5'- cGCgGCGcCGGUGGCcgcCGgcGCGAUCa -3' miRNA: 3'- cUGaCGC-GCCACCGu--GCuuUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 11096 | 0.67 | 0.731712 |
Target: 5'- cGCgugGCGCaucggcuGGUGcGCGCGAAGCuggCCg -3' miRNA: 3'- cUGa--CGCG-------CCAC-CGUGCUUUGuuaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 35120 | 0.67 | 0.732811 |
Target: 5'- ---aGgGCGG-GGCGCGGAucGgAAUCCg -3' miRNA: 3'- cugaCgCGCCaCCGUGCUU--UgUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 36308 | 0.67 | 0.742645 |
Target: 5'- cGAuCUGCGCGGcGGUcgacgccGCGcacuCGAUCCa -3' miRNA: 3'- -CU-GACGCGCCaCCG-------UGCuuu-GUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 26424 | 0.67 | 0.754532 |
Target: 5'- cGGCcGCGCGGgaacGCGCGcuGCAG-CCg -3' miRNA: 3'- -CUGaCGCGCCac--CGUGCuuUGUUaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 22975 | 0.68 | 0.676821 |
Target: 5'- aGCUGCGCGaGcaUGGCGCGuuGCcgcuGAUCg -3' miRNA: 3'- cUGACGCGC-C--ACCGUGCuuUG----UUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 37403 | 0.69 | 0.642575 |
Target: 5'- cGCUGCGCGGU--CGCGAcugccuGCAcgCCa -3' miRNA: 3'- cUGACGCGCCAccGUGCUu-----UGUuaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 33546 | 0.69 | 0.631123 |
Target: 5'- -cCUGCuucUGGUcgGGUGCGAGGCGAUCCc -3' miRNA: 3'- cuGACGc--GCCA--CCGUGCUUUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 40174 | 0.73 | 0.385754 |
Target: 5'- aGCUGCGCGacGGCACGAAGgGAaucgCCg -3' miRNA: 3'- cUGACGCGCcaCCGUGCUUUgUUa---GG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 22258 | 0.73 | 0.424198 |
Target: 5'- ---aGCGaCGGUGGCGCGcagcAGGCGAUCg -3' miRNA: 3'- cugaCGC-GCCACCGUGC----UUUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 32248 | 0.71 | 0.507422 |
Target: 5'- -cCUGcCGCGGagaaagguUGGCACGGGcAUGAUCCg -3' miRNA: 3'- cuGAC-GCGCC--------ACCGUGCUU-UGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 6812 | 0.7 | 0.574092 |
Target: 5'- cGCUGCGCGacuggcgcuacGUGGCGCGGGucuGCAacAUCg -3' miRNA: 3'- cUGACGCGC-----------CACCGUGCUU---UGU--UAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 41697 | 0.7 | 0.582026 |
Target: 5'- aGCUGCGCGaGgGGCucaucaaggcgaugACGGgcGGCGAUCCg -3' miRNA: 3'- cUGACGCGC-CaCCG--------------UGCU--UUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 32464 | 0.7 | 0.585434 |
Target: 5'- cACUGCGCGGc-GUGCGGAuCGAUCUc -3' miRNA: 3'- cUGACGCGCCacCGUGCUUuGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 28581 | 0.69 | 0.596818 |
Target: 5'- cGCUGCGCGGacgcGGUcgACGAgguagguuucGACAGUCUu -3' miRNA: 3'- cUGACGCGCCa---CCG--UGCU----------UUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 23125 | 0.69 | 0.619673 |
Target: 5'- uGGCUG-GCGGUgaGGUgacgGCGuGACGAUCCu -3' miRNA: 3'- -CUGACgCGCCA--CCG----UGCuUUGUUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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