miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28095 5' -54.6 NC_005887.1 + 2399 1.06 0.001308
Target:  5'- aAUCGAGAUCGAGACACGCGAUGCGCGu -3'
miRNA:   3'- -UAGCUCUAGCUCUGUGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 42014 0.79 0.128053
Target:  5'- cGUCGAGuGUCGccgcGGCGCGCGAUGCGUa -3'
miRNA:   3'- -UAGCUC-UAGCu---CUGUGCGCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 37848 0.78 0.147583
Target:  5'- aGUCGGcGAgc-AGACGCGCGAUGCGCGc -3'
miRNA:   3'- -UAGCU-CUagcUCUGUGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 11536 0.76 0.19494
Target:  5'- cGUCGAacuGGcCGAGGC-CGCGGUGCGCGc -3'
miRNA:   3'- -UAGCU---CUaGCUCUGuGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 16438 0.76 0.205882
Target:  5'- -aCGGGAUCGAGAacCGCG-UGCGCGc -3'
miRNA:   3'- uaGCUCUAGCUCUguGCGCuACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 14978 0.76 0.205882
Target:  5'- uUCGGGAUCGAGACgAUGCcGAcgcucgucUGCGCGc -3'
miRNA:   3'- uAGCUCUAGCUCUG-UGCG-CU--------ACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 13508 0.74 0.26185
Target:  5'- -aCGAGGUCGccGGCACGgGcAUGCGCGc -3'
miRNA:   3'- uaGCUCUAGCu-CUGUGCgC-UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 300 0.73 0.283084
Target:  5'- -gCGuGAUCagcGAGGC-CGCGGUGCGCGc -3'
miRNA:   3'- uaGCuCUAG---CUCUGuGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 1131 0.72 0.337866
Target:  5'- uGUCGAGcUCGgucacGGGCACGaCGAcGCGCGg -3'
miRNA:   3'- -UAGCUCuAGC-----UCUGUGC-GCUaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 5902 0.71 0.381492
Target:  5'- cGUCGAGcUCGGucGcCAgGCGAUGCGCa -3'
miRNA:   3'- -UAGCUCuAGCU--CuGUgCGCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 8874 0.7 0.428717
Target:  5'- cGUCGAGAUCGcGACGC-CGuacGCGCu -3'
miRNA:   3'- -UAGCUCUAGCuCUGUGcGCua-CGCGc -5'
28095 5' -54.6 NC_005887.1 + 34688 0.7 0.442546
Target:  5'- uGUCGAGcagcagcgggcggccGUCGucGCGCuuGCGGUGCGCGg -3'
miRNA:   3'- -UAGCUC---------------UAGCucUGUG--CGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 35108 0.69 0.479219
Target:  5'- -cCGAGGUCGAuGAuaUugGuCGAUGCGCc -3'
miRNA:   3'- uaGCUCUAGCU-CU--GugC-GCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 16915 0.69 0.500226
Target:  5'- -cCGAgcaGAUCGgcaAGACgacggGCGCGAUGCGUGa -3'
miRNA:   3'- uaGCU---CUAGC---UCUG-----UGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 22979 0.68 0.543381
Target:  5'- aAUCGAGuugaucGUCGccGCACGCGucugcUGCGCGa -3'
miRNA:   3'- -UAGCUC------UAGCucUGUGCGCu----ACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 40731 0.68 0.543381
Target:  5'- uUCGAGGucgccgcccgcgUCGAGGCgaucgccguugGCGCGccGCGCGc -3'
miRNA:   3'- uAGCUCU------------AGCUCUG-----------UGCGCuaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 28043 0.68 0.554369
Target:  5'- cGUCGGcguGAUCGAG-CAgGCGcUGCGCc -3'
miRNA:   3'- -UAGCU---CUAGCUCuGUgCGCuACGCGc -5'
28095 5' -54.6 NC_005887.1 + 14692 0.68 0.554369
Target:  5'- gAUCGGGcucGUCGcGGCGgGCGGgccggGCGCGg -3'
miRNA:   3'- -UAGCUC---UAGCuCUGUgCGCUa----CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 30442 0.68 0.558782
Target:  5'- cGUCGGGG-CGGGGCAuguUgccgggcuggaacagGCGGUGCGCGa -3'
miRNA:   3'- -UAGCUCUaGCUCUGU---G---------------CGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 6448 0.68 0.563206
Target:  5'- -cCGAGAUCGAagUGCGCGAccugaaguacggGCGCGg -3'
miRNA:   3'- uaGCUCUAGCUcuGUGCGCUa-----------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.