miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28095 5' -54.6 NC_005887.1 + 36221 0.66 0.666326
Target:  5'- cGUCGAGcacgcuuUCGAGGCACcacuucgccaGCucGUGCGCGg -3'
miRNA:   3'- -UAGCUCu------AGCUCUGUG----------CGc-UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 14738 0.68 0.565421
Target:  5'- -gCGAcGAUCGAGAaa-GCGAuucUGCGCa -3'
miRNA:   3'- uaGCU-CUAGCUCUgugCGCU---ACGCGc -5'
28095 5' -54.6 NC_005887.1 + 40793 0.67 0.621352
Target:  5'- gGUCGAGGuUCGuGGCG-GCGAcGCGCc -3'
miRNA:   3'- -UAGCUCU-AGCuCUGUgCGCUaCGCGc -5'
28095 5' -54.6 NC_005887.1 + 974 0.67 0.637109
Target:  5'- -aCGAGGugaUCGccGACACGCGcaauugccggccgccGUGCGCGc -3'
miRNA:   3'- uaGCUCU---AGCu-CUGUGCGC---------------UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 35116 0.66 0.655105
Target:  5'- uUCGAGggCGGGGCGCG-GAUcggaauccgGCGCc -3'
miRNA:   3'- uAGCUCuaGCUCUGUGCgCUA---------CGCGc -5'
28095 5' -54.6 NC_005887.1 + 38166 0.66 0.655105
Target:  5'- -cCGAGcgCGAaAUAgGCGGUGUGCa -3'
miRNA:   3'- uaGCUCuaGCUcUGUgCGCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 17155 0.66 0.655105
Target:  5'- gGUCGgcgaAGAUCGcGAgGCGUGGgagcGCGCGa -3'
miRNA:   3'- -UAGC----UCUAGCuCUgUGCGCUa---CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 14927 0.66 0.666326
Target:  5'- cUCGcGAUCGAcGCACGCc--GCGCGc -3'
miRNA:   3'- uAGCuCUAGCUcUGUGCGcuaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 5748 0.66 0.666326
Target:  5'- -cCGGGAUuccggcCGAGGC-CGCGAagGCGCu -3'
miRNA:   3'- uaGCUCUA------GCUCUGuGCGCUa-CGCGc -5'
28095 5' -54.6 NC_005887.1 + 30442 0.68 0.558782
Target:  5'- cGUCGGGG-CGGGGCAuguUgccgggcuggaacagGCGGUGCGCGa -3'
miRNA:   3'- -UAGCUCUaGCUCUGU---G---------------CGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 28043 0.68 0.554369
Target:  5'- cGUCGGcguGAUCGAG-CAgGCGcUGCGCc -3'
miRNA:   3'- -UAGCU---CUAGCUCuGUgCGCuACGCGc -5'
28095 5' -54.6 NC_005887.1 + 14692 0.68 0.554369
Target:  5'- gAUCGGGcucGUCGcGGCGgGCGGgccggGCGCGg -3'
miRNA:   3'- -UAGCUC---UAGCuCUGUgCGCUa----CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 16438 0.76 0.205882
Target:  5'- -aCGGGAUCGAGAacCGCG-UGCGCGc -3'
miRNA:   3'- uaGCUCUAGCUCUguGCGCuACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 13508 0.74 0.26185
Target:  5'- -aCGAGGUCGccGGCACGgGcAUGCGCGc -3'
miRNA:   3'- uaGCUCUAGCu-CUGUGCgC-UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 300 0.73 0.283084
Target:  5'- -gCGuGAUCagcGAGGC-CGCGGUGCGCGc -3'
miRNA:   3'- uaGCuCUAG---CUCUGuGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 5902 0.71 0.381492
Target:  5'- cGUCGAGcUCGGucGcCAgGCGAUGCGCa -3'
miRNA:   3'- -UAGCUCuAGCU--CuGUgCGCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 8874 0.7 0.428717
Target:  5'- cGUCGAGAUCGcGACGC-CGuacGCGCu -3'
miRNA:   3'- -UAGCUCUAGCuCUGUGcGCua-CGCGc -5'
28095 5' -54.6 NC_005887.1 + 34688 0.7 0.442546
Target:  5'- uGUCGAGcagcagcgggcggccGUCGucGCGCuuGCGGUGCGCGg -3'
miRNA:   3'- -UAGCUC---------------UAGCucUGUG--CGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 16915 0.69 0.500226
Target:  5'- -cCGAgcaGAUCGgcaAGACgacggGCGCGAUGCGUGa -3'
miRNA:   3'- uaGCU---CUAGC---UCUG-----UGCGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 40731 0.68 0.543381
Target:  5'- uUCGAGGucgccgcccgcgUCGAGGCgaucgccguugGCGCGccGCGCGc -3'
miRNA:   3'- uAGCUCU------------AGCUCUG-----------UGCGCuaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.