Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28095 | 5' | -54.6 | NC_005887.1 | + | 26947 | 0.66 | 0.655105 |
Target: 5'- cGUCGAcGAUCcgcugcccGCGCGCGAUcaGCGCGg -3' miRNA: 3'- -UAGCU-CUAGcuc-----UGUGCGCUA--CGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 35108 | 0.69 | 0.479219 |
Target: 5'- -cCGAGGUCGAuGAuaUugGuCGAUGCGCc -3' miRNA: 3'- uaGCUCUAGCU-CU--GugC-GCUACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 1131 | 0.72 | 0.337866 |
Target: 5'- uGUCGAGcUCGgucacGGGCACGaCGAcGCGCGg -3' miRNA: 3'- -UAGCUCuAGC-----UCUGUGC-GCUaCGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 14978 | 0.76 | 0.205882 |
Target: 5'- uUCGGGAUCGAGACgAUGCcGAcgcucgucUGCGCGc -3' miRNA: 3'- uAGCUCUAGCUCUG-UGCG-CU--------ACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 22979 | 0.68 | 0.543381 |
Target: 5'- aAUCGAGuugaucGUCGccGCACGCGucugcUGCGCGa -3' miRNA: 3'- -UAGCUC------UAGCucUGUGCGCu----ACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 11536 | 0.76 | 0.19494 |
Target: 5'- cGUCGAacuGGcCGAGGC-CGCGGUGCGCGc -3' miRNA: 3'- -UAGCU---CUaGCUCUGuGCGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 37848 | 0.78 | 0.147583 |
Target: 5'- aGUCGGcGAgc-AGACGCGCGAUGCGCGc -3' miRNA: 3'- -UAGCU-CUagcUCUGUGCGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 2399 | 1.06 | 0.001308 |
Target: 5'- aAUCGAGAUCGAGACACGCGAUGCGCGu -3' miRNA: 3'- -UAGCUCUAGCUCUGUGCGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 6448 | 0.68 | 0.563206 |
Target: 5'- -cCGAGAUCGAagUGCGCGAccugaaguacggGCGCGg -3' miRNA: 3'- uaGCUCUAGCUcuGUGCGCUa-----------CGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 9884 | 0.67 | 0.598881 |
Target: 5'- -aCGAGAUCGAuccGCACGCc--GCGCa -3' miRNA: 3'- uaGCUCUAGCUc--UGUGCGcuaCGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 5748 | 0.66 | 0.666326 |
Target: 5'- -cCGGGAUuccggcCGAGGC-CGCGAagGCGCu -3' miRNA: 3'- uaGCUCUA------GCUCUGuGCGCUa-CGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 974 | 0.67 | 0.637109 |
Target: 5'- -aCGAGGugaUCGccGACACGCGcaauugccggccgccGUGCGCGc -3' miRNA: 3'- uaGCUCU---AGCu-CUGUGCGC---------------UACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 40793 | 0.67 | 0.621352 |
Target: 5'- gGUCGAGGuUCGuGGCG-GCGAcGCGCc -3' miRNA: 3'- -UAGCUCU-AGCuCUGUgCGCUaCGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 14738 | 0.68 | 0.565421 |
Target: 5'- -gCGAcGAUCGAGAaa-GCGAuucUGCGCa -3' miRNA: 3'- uaGCU-CUAGCUCUgugCGCU---ACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 30442 | 0.68 | 0.558782 |
Target: 5'- cGUCGGGG-CGGGGCAuguUgccgggcuggaacagGCGGUGCGCGa -3' miRNA: 3'- -UAGCUCUaGCUCUGU---G---------------CGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 28043 | 0.68 | 0.554369 |
Target: 5'- cGUCGGcguGAUCGAG-CAgGCGcUGCGCc -3' miRNA: 3'- -UAGCU---CUAGCUCuGUgCGCuACGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 14692 | 0.68 | 0.554369 |
Target: 5'- gAUCGGGcucGUCGcGGCGgGCGGgccggGCGCGg -3' miRNA: 3'- -UAGCUC---UAGCuCUGUgCGCUa----CGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 34688 | 0.7 | 0.442546 |
Target: 5'- uGUCGAGcagcagcgggcggccGUCGucGCGCuuGCGGUGCGCGg -3' miRNA: 3'- -UAGCUC---------------UAGCucUGUG--CGCUACGCGC- -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 8874 | 0.7 | 0.428717 |
Target: 5'- cGUCGAGAUCGcGACGC-CGuacGCGCu -3' miRNA: 3'- -UAGCUCUAGCuCUGUGcGCua-CGCGc -5' |
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28095 | 5' | -54.6 | NC_005887.1 | + | 13508 | 0.74 | 0.26185 |
Target: 5'- -aCGAGGUCGccGGCACGgGcAUGCGCGc -3' miRNA: 3'- uaGCUCUAGCu-CUGUGCgC-UACGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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