Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 9610 | 0.7 | 0.209536 |
Target: 5'- cCGGCGCGCacgcgagcGCCGCGCuaccccGCcGUGGGUGa -3' miRNA: 3'- cGUCGCGCG--------UGGCGUG------CGaCAUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 9653 | 0.69 | 0.244982 |
Target: 5'- --cGCGCgGCuauCCGUGCGCUGUAcGCGg -3' miRNA: 3'- cguCGCG-CGu--GGCGUGCGACAUcCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11112 | 0.71 | 0.188435 |
Target: 5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3' miRNA: 3'- -CguCGCGCGUggCGugCGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11319 | 0.68 | 0.299809 |
Target: 5'- gGCAGCGaGCGCCGCAacCGCgac-GGCc -3' miRNA: 3'- -CGUCGCgCGUGGCGU--GCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11376 | 0.67 | 0.346846 |
Target: 5'- cGCGGgcgucaGCGCAgCCGgaGCGCUGgcGGCc -3' miRNA: 3'- -CGUCg-----CGCGU-GGCg-UGCGACauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11400 | 0.72 | 0.167858 |
Target: 5'- cGUAcGCGgGCGCCgacaucaccgccgaGCGCGCUGUgcacaAGGCGa -3' miRNA: 3'- -CGU-CGCgCGUGG--------------CGUGCGACA-----UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11554 | 0.69 | 0.277506 |
Target: 5'- cGCGGUGCGCGCCauugaucGCGCGCaGaAGGa- -3' miRNA: 3'- -CGUCGCGCGUGG-------CGUGCGaCaUCCgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11558 | 0.72 | 0.160294 |
Target: 5'- cGCAGCGCGCGgCGguCGCggaaucGGGCu -3' miRNA: 3'- -CGUCGCGCGUgGCguGCGaca---UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11724 | 0.66 | 0.389911 |
Target: 5'- cGCcGCGCGCACgGCGCGCacgaauGCa -3' miRNA: 3'- -CGuCGCGCGUGgCGUGCGacauc-CGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11800 | 0.71 | 0.193528 |
Target: 5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3' miRNA: 3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 12629 | 0.66 | 0.381022 |
Target: 5'- cGCGGCGCGUgaucCUGCgACGCgac-GGCGa -3' miRNA: 3'- -CGUCGCGCGu---GGCG-UGCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 12682 | 0.67 | 0.367085 |
Target: 5'- aGCaAGCGCcagcugugcuaccucGCGCCGCGCGUgaGUGacgacGGCGa -3' miRNA: 3'- -CG-UCGCG---------------CGUGGCGUGCGa-CAU-----CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14125 | 0.67 | 0.336221 |
Target: 5'- aGCuGCGCGCGCUGCucaaaaccgccgagACGCgc--GGCGc -3' miRNA: 3'- -CGuCGCGCGUGGCG--------------UGCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14218 | 0.67 | 0.37227 |
Target: 5'- aCAGgGCgGCGCCGC--GCUGUucGGCGc -3' miRNA: 3'- cGUCgCG-CGUGGCGugCGACAu-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14704 | 0.68 | 0.319564 |
Target: 5'- cGCGGCGgGCggGCCGgGCGCggcgaucgcgcAGGCGa -3' miRNA: 3'- -CGUCGCgCG--UGGCgUGCGaca--------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 14873 | 0.75 | 0.09116 |
Target: 5'- aCAGCGCGCACCGCGCggcagaaugcgccaGCUGcUAcGGUGc -3' miRNA: 3'- cGUCGCGCGUGGCGUG--------------CGAC-AU-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15003 | 0.69 | 0.269235 |
Target: 5'- cGCAG-GCGUGCCGCccgagcugaugcucGCGCUGaagaaugcGGGCGa -3' miRNA: 3'- -CGUCgCGCGUGGCG--------------UGCGACa-------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15314 | 0.73 | 0.135998 |
Target: 5'- gGCAGCGUGCGCgguCGCGCGCUcgccgAGGUu -3' miRNA: 3'- -CGUCGCGCGUG---GCGUGCGAca---UCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15605 | 0.66 | 0.417375 |
Target: 5'- cGCAGCGCacggGCGUCGCGCaGC---AGGCGg -3' miRNA: 3'- -CGUCGCG----CGUGGCGUG-CGacaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15844 | 0.72 | 0.173389 |
Target: 5'- cGCGGCGCgaucgagggaaacGC-CCGCGCGCaGcAGGCGc -3' miRNA: 3'- -CGUCGCG-------------CGuGGCGUGCGaCaUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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