miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 344 0.7 0.241224
Target:  5'- cGCGGCGacacucgacgugggcCGCagGCCGUGCuGCUGaUAGGCGa -3'
miRNA:   3'- -CGUCGC---------------GCG--UGGCGUG-CGAC-AUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 418 0.68 0.285265
Target:  5'- --cGCGcCGCGCCGCcCGCUGUugcuGCGc -3'
miRNA:   3'- cguCGC-GCGUGGCGuGCGACAuc--CGC- -5'
28096 3' -59.7 NC_005887.1 + 1070 0.77 0.075345
Target:  5'- aGCAGCGCGC-CCGUGCGCagGUcgacGGCGc -3'
miRNA:   3'- -CGUCGCGCGuGGCGUGCGa-CAu---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 1553 0.68 0.295387
Target:  5'- aGCGGCGCGuCGCCGCcACgaaccucgaccgccgGCUcGgcGGCGn -3'
miRNA:   3'- -CGUCGCGC-GUGGCG-UG---------------CGA-CauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 1598 0.71 0.198741
Target:  5'- cGCGGCGCGCcaacggcgAUCGCcucgACGCgGgcGGCGa -3'
miRNA:   3'- -CGUCGCGCG--------UGGCG----UGCGaCauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2221 1.1 0.000212
Target:  5'- cGCAGCGCGCACCGCACGCUGUAGGCGu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2395 0.69 0.257859
Target:  5'- cCGGauccuGCGUGCCGCugGCUucgAGGCGa -3'
miRNA:   3'- cGUCg----CGCGUGGCGugCGAca-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2528 0.71 0.178601
Target:  5'- uGCcGCaCGCugCGCaagGCGCUGUcGGGCGg -3'
miRNA:   3'- -CGuCGcGCGugGCG---UGCGACA-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3402 0.75 0.097283
Target:  5'- cGCcGCGCGCuACCGCugGCa--GGGCGg -3'
miRNA:   3'- -CGuCGCGCG-UGGCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3526 0.66 0.407168
Target:  5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3'
miRNA:   3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3946 0.69 0.24815
Target:  5'- cGCGGCGCGCAgaagcucgucgacCCGC-CGUUGcucgcgaacgaggAGGCGu -3'
miRNA:   3'- -CGUCGCGCGU-------------GGCGuGCGACa------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 4204 0.66 0.408089
Target:  5'- -aAGUGCuGCAgCGCGCGCaGgagaaAGGCGu -3'
miRNA:   3'- cgUCGCG-CGUgGCGUGCGaCa----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 4497 0.72 0.169226
Target:  5'- gGC-GCGCGCAUCGCGCGuCUGcucgccgacUAcGGCGg -3'
miRNA:   3'- -CGuCGCGCGUGGCGUGC-GAC---------AU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 6292 0.67 0.346846
Target:  5'- aCGGCGUGCGCgaGCGCGUcg-AGGCc -3'
miRNA:   3'- cGUCGCGCGUGg-CGUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 7212 0.67 0.363656
Target:  5'- --cGCGUGCGCag-GCGCUGUcGGCGu -3'
miRNA:   3'- cguCGCGCGUGgcgUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 7265 0.73 0.135624
Target:  5'- gGCAGCGacCGCgacaucggccccgGCCGCcCGCUGUGGGUc -3'
miRNA:   3'- -CGUCGC--GCG-------------UGGCGuGCGACAUCCGc -5'
28096 3' -59.7 NC_005887.1 + 7936 0.66 0.411788
Target:  5'- -uGGCGuCGCaagucggaaucuguaACCGCGCGCUGacgaagaucGGCGa -3'
miRNA:   3'- cgUCGC-GCG---------------UGGCGUGCGACau-------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 8095 0.68 0.285265
Target:  5'- aGCGcGCGCGCAgcUCGcCGCGCUcgccgAGGCGc -3'
miRNA:   3'- -CGU-CGCGCGU--GGC-GUGCGAca---UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 8193 0.71 0.203538
Target:  5'- gGCAGUucgaugucuacccGCGCACCGaCACGCgc-GGGCu -3'
miRNA:   3'- -CGUCG-------------CGCGUGGC-GUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 9564 0.73 0.147692
Target:  5'- aGCGGCGCGCGCCgauccugcGCACgagccgGCUGcauGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGG--------CGUG------CGACau-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.