miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 28538 0.7 0.226673
Target:  5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3'
miRNA:   3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2528 0.71 0.178601
Target:  5'- uGCcGCaCGCugCGCaagGCGCUGUcGGGCGg -3'
miRNA:   3'- -CGuCGcGCGugGCG---UGCGACA-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11112 0.71 0.188435
Target:  5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3'
miRNA:   3'- -CguCGCGCGUggCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11800 0.71 0.193528
Target:  5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3'
miRNA:   3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28234 0.71 0.193528
Target:  5'- aGCAGCGCGCGCaGCuuCGCgagcGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGgCGu-GCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40806 0.71 0.198741
Target:  5'- gGCGGCGaCGCGCCGCuCGacgaUGacgAGGUGa -3'
miRNA:   3'- -CGUCGC-GCGUGGCGuGCg---ACa--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 8193 0.71 0.203538
Target:  5'- gGCAGUucgaugucuacccGCGCACCGaCACGCgc-GGGCu -3'
miRNA:   3'- -CGUCG-------------CGCGUGGC-GUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 16513 0.7 0.209536
Target:  5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3'
miRNA:   3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17180 0.7 0.222571
Target:  5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3'
miRNA:   3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 15844 0.72 0.173389
Target:  5'- cGCGGCGCgaucgagggaaacGC-CCGCGCGCaGcAGGCGc -3'
miRNA:   3'- -CGUCGCG-------------CGuGGCGUGCGaCaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 4497 0.72 0.169226
Target:  5'- gGC-GCGCGCAUCGCGCGuCUGcucgccgacUAcGGCGg -3'
miRNA:   3'- -CGuCGCGCGUGGCGUGC-GAC---------AU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 33642 0.72 0.164705
Target:  5'- cGUAGCGCGCGCUGCGCucgGCgaggGUuucauugaucucGGGCa -3'
miRNA:   3'- -CGUCGCGCGUGGCGUG---CGa---CA------------UCCGc -5'
28096 3' -59.7 NC_005887.1 + 14873 0.75 0.09116
Target:  5'- aCAGCGCGCACCGCGCggcagaaugcgccaGCUGcUAcGGUGc -3'
miRNA:   3'- cGUCGCGCGUGGCGUG--------------CGAC-AU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 28734 0.75 0.091938
Target:  5'- cGC-GCGCGCuAUCGC-CGUUGUAGGUGa -3'
miRNA:   3'- -CGuCGCGCG-UGGCGuGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3402 0.75 0.097283
Target:  5'- cGCcGCGCGCuACCGCugGCa--GGGCGg -3'
miRNA:   3'- -CGuCGCGCG-UGGCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40138 0.74 0.118058
Target:  5'- uGCGGUGCGCGCUGCGCGCcgcgcucgccgcgUGUGaGCu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCG-------------ACAUcCGc -5'
28096 3' -59.7 NC_005887.1 + 38411 0.74 0.125162
Target:  5'- uCAGUGCGCugCGUuaggcaACGCUGUacacgaaucguAGGCGa -3'
miRNA:   3'- cGUCGCGCGugGCG------UGCGACA-----------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40016 0.73 0.132294
Target:  5'- cGCGGUGCGCAUCaugGCGCGgCUcgAGGCGg -3'
miRNA:   3'- -CGUCGCGCGUGG---CGUGC-GAcaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 7265 0.73 0.135624
Target:  5'- gGCAGCGacCGCgacaucggccccgGCCGCcCGCUGUGGGUc -3'
miRNA:   3'- -CGUCGC--GCG-------------UGGCGuGCGACAUCCGc -5'
28096 3' -59.7 NC_005887.1 + 11558 0.72 0.160294
Target:  5'- cGCAGCGCGCGgCGguCGCggaaucGGGCu -3'
miRNA:   3'- -CGUCGCGCGUgGCguGCGaca---UCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.