Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28096 | 3' | -59.7 | NC_005887.1 | + | 35297 | 0.65 | 0.425842 |
Target: 5'- aGCAGCGCuucggccuucucuGCaucgcuccacuGCCGCGCGCcgc-GGCGg -3' miRNA: 3'- -CGUCGCG-------------CG-----------UGGCGUGCGacauCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 24604 | 0.65 | 0.425842 |
Target: 5'- cGCGGCGaugaucuUGCgGCCGCACGC-GUGGuCGa -3' miRNA: 3'- -CGUCGC-------GCG-UGGCGUGCGaCAUCcGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 7936 | 0.66 | 0.411788 |
Target: 5'- -uGGCGuCGCaagucggaaucuguaACCGCGCGCUGacgaagaucGGCGa -3' miRNA: 3'- cgUCGC-GCG---------------UGGCGUGCGACau-------CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 4204 | 0.66 | 0.408089 |
Target: 5'- -aAGUGCuGCAgCGCGCGCaGgagaaAGGCGu -3' miRNA: 3'- cgUCGCG-CGUgGCGUGCGaCa----UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 11724 | 0.66 | 0.389911 |
Target: 5'- cGCcGCGCGCACgGCGCGCacgaauGCa -3' miRNA: 3'- -CGuCGCGCGUGgCGUGCGacauc-CGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 30808 | 0.66 | 0.389911 |
Target: 5'- -uGGCGCGCACCGCG-GCcuc-GGCc -3' miRNA: 3'- cgUCGCGCGUGGCGUgCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 27655 | 0.66 | 0.389911 |
Target: 5'- --uGCGCGCugagcuGCCGCGCGCgc--GGCu -3' miRNA: 3'- cguCGCGCG------UGGCGUGCGacauCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 17498 | 0.66 | 0.411788 |
Target: 5'- aCGGcCGUGCAUgauggcacggaaaugCGCACGCUcGaGGGCGg -3' miRNA: 3'- cGUC-GCGCGUG---------------GCGUGCGA-CaUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 32743 | 0.66 | 0.398934 |
Target: 5'- cGCGGCGCuCGCgUGCGCGCcGgcGcGCGc -3' miRNA: 3'- -CGUCGCGcGUG-GCGUGCGaCauC-CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 41640 | 0.66 | 0.398934 |
Target: 5'- uGCuGCgucuGCGCGgCGCACGCUucgucuacGUuGGCGa -3' miRNA: 3'- -CGuCG----CGCGUgGCGUGCGA--------CAuCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 18022 | 0.66 | 0.398934 |
Target: 5'- cGCcGCGCGCuuaCGCGCGCcggacUGacggccgacgauUGGGCGa -3' miRNA: 3'- -CGuCGCGCGug-GCGUGCG-----AC------------AUCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28057 | 0.66 | 0.406248 |
Target: 5'- aGCAG-GCGCugCGCcacccauguucggucACGCUGcaugccguuuaccgGGGCGu -3' miRNA: 3'- -CGUCgCGCGugGCG---------------UGCGACa-------------UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 32797 | 0.66 | 0.417375 |
Target: 5'- uCGGCGCGCGCCGCuucac--GGGCa -3' miRNA: 3'- cGUCGCGCGUGGCGugcgacaUCCGc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 28804 | 0.66 | 0.417375 |
Target: 5'- gGCGGCaGCGCAUCGCcgaucgcauuCGCgaucGUGGcGCGc -3' miRNA: 3'- -CGUCG-CGCGUGGCGu---------GCGa---CAUC-CGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 39144 | 0.66 | 0.408089 |
Target: 5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3' miRNA: 3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 16452 | 0.66 | 0.383675 |
Target: 5'- cGCGuGCGCGCgggcaugcgcucgACCGCGCggcaggauccggcggGCUGgucGGCGa -3' miRNA: 3'- -CGU-CGCGCG-------------UGGCGUG---------------CGACau-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 26244 | 0.66 | 0.414576 |
Target: 5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3' miRNA: 3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 3526 | 0.66 | 0.407168 |
Target: 5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3' miRNA: 3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 42042 | 0.66 | 0.408089 |
Target: 5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3' miRNA: 3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5' |
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28096 | 3' | -59.7 | NC_005887.1 | + | 15605 | 0.66 | 0.417375 |
Target: 5'- cGCAGCGCacggGCGUCGCGCaGC---AGGCGg -3' miRNA: 3'- -CGUCGCG----CGUGGCGUG-CGacaUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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