miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 2221 1.1 0.000212
Target:  5'- cGCAGCGCGCACCGCACGCUGUAGGCGu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40866 0.78 0.063444
Target:  5'- cGCcGCGCgaGCGCCGCACGCcGUcGGCGu -3'
miRNA:   3'- -CGuCGCG--CGUGGCGUGCGaCAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 1070 0.77 0.075345
Target:  5'- aGCAGCGCGC-CCGUGCGCagGUcgacGGCGc -3'
miRNA:   3'- -CGUCGCGCGuGGCGUGCGa-CAu---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 30487 0.76 0.083723
Target:  5'- cGCGGCccgugcguuGCGCACCGCAaaacugcaucagccCGC-GUAGGCGg -3'
miRNA:   3'- -CGUCG---------CGCGUGGCGU--------------GCGaCAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 14873 0.75 0.09116
Target:  5'- aCAGCGCGCACCGCGCggcagaaugcgccaGCUGcUAcGGUGc -3'
miRNA:   3'- cGUCGCGCGUGGCGUG--------------CGAC-AU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 28734 0.75 0.091938
Target:  5'- cGC-GCGCGCuAUCGC-CGUUGUAGGUGa -3'
miRNA:   3'- -CGuCGCGCG-UGGCGuGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3402 0.75 0.097283
Target:  5'- cGCcGCGCGCuACCGCugGCa--GGGCGg -3'
miRNA:   3'- -CGuCGCGCG-UGGCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 18129 0.75 0.101769
Target:  5'- aGCAGCGCaucaaacggcuugGCAacaCGCacgucggcaacacgACGCUGUGGGCGg -3'
miRNA:   3'- -CGUCGCG-------------CGUg--GCG--------------UGCGACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40138 0.74 0.118058
Target:  5'- uGCGGUGCGCGCUGCGCGCcgcgcucgccgcgUGUGaGCu -3'
miRNA:   3'- -CGUCGCGCGUGGCGUGCG-------------ACAUcCGc -5'
28096 3' -59.7 NC_005887.1 + 38411 0.74 0.125162
Target:  5'- uCAGUGCGCugCGUuaggcaACGCUGUacacgaaucguAGGCGa -3'
miRNA:   3'- cGUCGCGCGugGCG------UGCGACA-----------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30624 0.74 0.125162
Target:  5'- uGCAuucGUGCGCGCCGUGCGCgc--GGCGa -3'
miRNA:   3'- -CGU---CGCGCGUGGCGUGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32333 0.73 0.128682
Target:  5'- cCAGCGCG-GCCGCGCGUgaUGUGgucGGCGa -3'
miRNA:   3'- cGUCGCGCgUGGCGUGCG--ACAU---CCGC- -5'
28096 3' -59.7 NC_005887.1 + 40016 0.73 0.132294
Target:  5'- cGCGGUGCGCAUCaugGCGCGgCUcgAGGCGg -3'
miRNA:   3'- -CGUCGCGCGUGG---CGUGC-GAcaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 7265 0.73 0.135624
Target:  5'- gGCAGCGacCGCgacaucggccccgGCCGCcCGCUGUGGGUc -3'
miRNA:   3'- -CGUCGC--GCG-------------UGGCGuGCGACAUCCGc -5'
28096 3' -59.7 NC_005887.1 + 15314 0.73 0.135998
Target:  5'- gGCAGCGUGCGCgguCGCGCGCUcgccgAGGUu -3'
miRNA:   3'- -CGUCGCGCGUG---GCGUGCGAca---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 9564 0.73 0.147692
Target:  5'- aGCGGCGCGCGCCgauccugcGCACgagccgGCUGcauGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGG--------CGUG------CGACau-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 11558 0.72 0.160294
Target:  5'- cGCAGCGCGCGgCGguCGCggaaucGGGCu -3'
miRNA:   3'- -CGUCGCGCGUgGCguGCGaca---UCCGc -5'
28096 3' -59.7 NC_005887.1 + 33642 0.72 0.164705
Target:  5'- cGUAGCGCGCGCUGCGCucgGCgaggGUuucauugaucucGGGCa -3'
miRNA:   3'- -CGUCGCGCGUGGCGUG---CGa---CA------------UCCGc -5'
28096 3' -59.7 NC_005887.1 + 11400 0.72 0.167858
Target:  5'- cGUAcGCGgGCGCCgacaucaccgccgaGCGCGCUGUgcacaAGGCGa -3'
miRNA:   3'- -CGU-CGCgCGUGG--------------CGUGCGACA-----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 4497 0.72 0.169226
Target:  5'- gGC-GCGCGCAUCGCGCGuCUGcucgccgacUAcGGCGg -3'
miRNA:   3'- -CGuCGCGCGUGGCGUGC-GAC---------AU-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.