miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28098 5' -58.8 NC_005887.1 + 493 0.76 0.101336
Target:  5'- gCUCGaacGGCACGaGCAUCAGGCgCCGC-Ca -3'
miRNA:   3'- -GAGC---CCGUGCaUGUAGUCCG-GGCGcG- -5'
28098 5' -58.8 NC_005887.1 + 1361 0.69 0.295337
Target:  5'- gCUCGaGCGC-UACAUCcuGuCCCGCGCg -3'
miRNA:   3'- -GAGCcCGUGcAUGUAGucC-GGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 1374 1.1 0.000283
Target:  5'- gCUCGGGCACGUACAUCAGGCCCGCGCc -3'
miRNA:   3'- -GAGCCCGUGCAUGUAGUCCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 1709 0.66 0.469301
Target:  5'- aUCGGcGCGCGcuCGUCAGuGCCUGUcuuGCc -3'
miRNA:   3'- gAGCC-CGUGCauGUAGUC-CGGGCG---CG- -5'
28098 5' -58.8 NC_005887.1 + 2370 0.68 0.366919
Target:  5'- gUCGGGcCACG-GCGUCucGCCCuuGUGCg -3'
miRNA:   3'- gAGCCC-GUGCaUGUAGucCGGG--CGCG- -5'
28098 5' -58.8 NC_005887.1 + 2684 0.66 0.446654
Target:  5'- -cUGGuGCGCGUgaaGCGUaCGGGCggcaagcggccgagCCGCGCg -3'
miRNA:   3'- gaGCC-CGUGCA---UGUA-GUCCG--------------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 3442 0.66 0.459381
Target:  5'- -aUGGGCGCGaccuaccagaGCAucggucuguUCGGGCCUgGCGCg -3'
miRNA:   3'- gaGCCCGUGCa---------UGU---------AGUCCGGG-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 3841 0.66 0.439884
Target:  5'- aUCGGGCGCuucUACGUC-GGCaCCGaCGa -3'
miRNA:   3'- gAGCCCGUGc--AUGUAGuCCG-GGC-GCg -5'
28098 5' -58.8 NC_005887.1 + 4396 0.66 0.449574
Target:  5'- uUCuGGCGCGUaACGgaugCGGGCUgauucaacaaCGCGCg -3'
miRNA:   3'- gAGcCCGUGCA-UGUa---GUCCGG----------GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 6964 0.74 0.145404
Target:  5'- -gCGGGCGCaucgaGCAUgagcugugCAGGCCCGCGUg -3'
miRNA:   3'- gaGCCCGUGca---UGUA--------GUCCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 8189 0.66 0.459381
Target:  5'- gUCGGGCAguuCG-AUGUCua-CCCGCGCa -3'
miRNA:   3'- gAGCCCGU---GCaUGUAGuccGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 9795 0.69 0.325738
Target:  5'- -aCGGGCGaugaGUGgGUgauUGGGCCCGCGa -3'
miRNA:   3'- gaGCCCGUg---CAUgUA---GUCCGGGCGCg -5'
28098 5' -58.8 NC_005887.1 + 10202 0.68 0.366919
Target:  5'- gUCGaGUGCGUcGCGUCGauGCCCGCGCc -3'
miRNA:   3'- gAGCcCGUGCA-UGUAGUc-CGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 11405 0.66 0.469301
Target:  5'- -gCGGGCGCcgACAUCAccGCCgaGCGCg -3'
miRNA:   3'- gaGCCCGUGcaUGUAGUc-CGGg-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 12077 0.66 0.446654
Target:  5'- gUC-GGCACGUcGCucgGUCAGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- gAGcCCGUGCA-UG---UAGUCCG--------------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14201 0.74 0.133893
Target:  5'- gUCGGGCGCGgccucggACAgggcGGCgCCGCGCu -3'
miRNA:   3'- gAGCCCGUGCa------UGUagu-CCG-GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14479 0.68 0.366919
Target:  5'- gUCGGGCcucGCGcAgAUCGuGCCCGcCGCg -3'
miRNA:   3'- gAGCCCG---UGCaUgUAGUcCGGGC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 14693 0.71 0.241251
Target:  5'- aUCGGGCuCGUcGCGgcgggCGGGCCgGgCGCg -3'
miRNA:   3'- gAGCCCGuGCA-UGUa----GUCCGGgC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 14840 0.68 0.374703
Target:  5'- -gCGGGCACGUuCG-CGGGCgugcacaCCGCaGCa -3'
miRNA:   3'- gaGCCCGUGCAuGUaGUCCG-------GGCG-CG- -5'
28098 5' -58.8 NC_005887.1 + 15307 0.69 0.28809
Target:  5'- gUCGGGCggcaGCGUGCG-C-GGUCgCGCGCu -3'
miRNA:   3'- gAGCCCG----UGCAUGUaGuCCGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.