miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28098 5' -58.8 NC_005887.1 + 38137 0.67 0.384366
Target:  5'- -cCGcGGCGaugaaaaugcCGgACAUCAGGCCgaGCGCg -3'
miRNA:   3'- gaGC-CCGU----------GCaUGUAGUCCGGg-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 40999 0.69 0.310254
Target:  5'- gCUCGaagccuGGUACGUguggacagGCGUCuacuGGCgCCGCGCg -3'
miRNA:   3'- -GAGC------CCGUGCA--------UGUAGu---CCG-GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 9795 0.69 0.325738
Target:  5'- -aCGGGCGaugaGUGgGUgauUGGGCCCGCGa -3'
miRNA:   3'- gaGCCCGUg---CAUgUA---GUCCGGGCGCg -5'
28098 5' -58.8 NC_005887.1 + 23275 0.68 0.333693
Target:  5'- gCUCGuGGCGguUGCcgCA-GCCCGCGCc -3'
miRNA:   3'- -GAGC-CCGUgcAUGuaGUcCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 37863 0.68 0.341789
Target:  5'- -gCGGGCGCGguuguuagGCGgagauaAGGCCCGUaaaGCg -3'
miRNA:   3'- gaGCCCGUGCa-------UGUag----UCCGGGCG---CG- -5'
28098 5' -58.8 NC_005887.1 + 10202 0.68 0.366919
Target:  5'- gUCGaGUGCGUcGCGUCGauGCCCGCGCc -3'
miRNA:   3'- gAGCcCGUGCA-UGUAGUc-CGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14479 0.68 0.366919
Target:  5'- gUCGGGCcucGCGcAgAUCGuGCCCGcCGCg -3'
miRNA:   3'- gAGCCCG---UGCaUgUAGUcCGGGC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 14840 0.68 0.374703
Target:  5'- -gCGGGCACGUuCG-CGGGCgugcacaCCGCaGCa -3'
miRNA:   3'- gaGCCCGUGCAuGUaGUCCG-------GGCG-CG- -5'
28098 5' -58.8 NC_005887.1 + 16494 0.67 0.384366
Target:  5'- -gCGGGCugGUcgGCGaugucgCAGGCCgauCGCGUc -3'
miRNA:   3'- gaGCCCGugCA--UGUa-----GUCCGG---GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 1361 0.69 0.295337
Target:  5'- gCUCGaGCGC-UACAUCcuGuCCCGCGCg -3'
miRNA:   3'- -GAGCcCGUGcAUGUAGucC-GGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 30462 0.7 0.274017
Target:  5'- -cCGGGCugGaACAggCGgugcgcgacgcGGCCCGUGCg -3'
miRNA:   3'- gaGCCCGugCaUGUa-GU-----------CCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14693 0.71 0.241251
Target:  5'- aUCGGGCuCGUcGCGgcgggCGGGCCgGgCGCg -3'
miRNA:   3'- gAGCCCGuGCA-UGUa----GUCCGGgC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 17273 0.75 0.116559
Target:  5'- -cCGGGCGag-ACGUCGGGCggcgCCGCGCg -3'
miRNA:   3'- gaGCCCGUgcaUGUAGUCCG----GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 14201 0.74 0.133893
Target:  5'- gUCGGGCGCGgccucggACAgggcGGCgCCGCGCu -3'
miRNA:   3'- gAGCCCGUGCa------UGUagu-CCG-GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 28189 0.74 0.137633
Target:  5'- aUCGGGCuguGCGccGCAUCAGcGCCgCGCGUc -3'
miRNA:   3'- gAGCCCG---UGCa-UGUAGUC-CGG-GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 27238 0.73 0.166607
Target:  5'- aUCGcGGCGCaacUGCAUCGcgcgccGGCCCGCGUc -3'
miRNA:   3'- gAGC-CCGUGc--AUGUAGU------CCGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 16935 0.73 0.17584
Target:  5'- -aCGGGCGCGaUGCGUgAGcGCuucaaCCGCGCg -3'
miRNA:   3'- gaGCCCGUGC-AUGUAgUC-CG-----GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 32814 0.72 0.204687
Target:  5'- -aCGGGCACGaACAgCGGGCcgacgugauggccgCCGUGCa -3'
miRNA:   3'- gaGCCCGUGCaUGUaGUCCG--------------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 27989 0.71 0.211817
Target:  5'- gCUCGGGCcgaaucGCGU-CGUC-GGCCgGCGUu -3'
miRNA:   3'- -GAGCCCG------UGCAuGUAGuCCGGgCGCG- -5'
28098 5' -58.8 NC_005887.1 + 20377 0.71 0.241251
Target:  5'- -cCaGGCACG-GCAuuaaccugaauuUCAGGCCCgGCGCg -3'
miRNA:   3'- gaGcCCGUGCaUGU------------AGUCCGGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.