miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28100 3' -59.7 NC_005887.1 + 903 1.14 0.00011
Target:  5'- cGCGGCGUGCCGAGCAGCGCAUAGCCCa -3'
miRNA:   3'- -CGCCGCACGGCUCGUCGCGUAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 33777 0.84 0.022587
Target:  5'- cGCGGCGUGCCGGGCuuccaccaAGCGCGga-CCCa -3'
miRNA:   3'- -CGCCGCACGGCUCG--------UCGCGUaucGGG- -5'
28100 3' -59.7 NC_005887.1 + 14157 0.8 0.044193
Target:  5'- cGCGGC--GCUGAuGCGGCGCAcAGCCCg -3'
miRNA:   3'- -CGCCGcaCGGCU-CGUCGCGUaUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 26401 0.79 0.052421
Target:  5'- aGCGGCGUGCgGcgcguGGcCGGCGCAUcgauuccGGCCCg -3'
miRNA:   3'- -CGCCGCACGgC-----UC-GUCGCGUA-------UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 41104 0.79 0.054112
Target:  5'- uGCGacguuuucGCGUGCUGAGCGccGCGCAgcGCCCg -3'
miRNA:   3'- -CGC--------CGCACGGCUCGU--CGCGUauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 30284 0.78 0.060718
Target:  5'- aGCGaCGUGCCGAccugcuGCAGCGCGgcGCCUg -3'
miRNA:   3'- -CGCcGCACGGCU------CGUCGCGUauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 37204 0.77 0.068102
Target:  5'- aGCGGCGcGCCGAcgucggGCAGCGCGgucauGCCg -3'
miRNA:   3'- -CGCCGCaCGGCU------CGUCGCGUau---CGGg -5'
28100 3' -59.7 NC_005887.1 + 1421 0.76 0.083149
Target:  5'- uCGGCGuUGCCGAacucGguGCGCgcgcgGUAGCCCu -3'
miRNA:   3'- cGCCGC-ACGGCU----CguCGCG-----UAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 25274 0.76 0.085543
Target:  5'- uGCGaGCG-GUCGAGCAGCGgCAUGacggcguccGCCCa -3'
miRNA:   3'- -CGC-CGCaCGGCUCGUCGC-GUAU---------CGGG- -5'
28100 3' -59.7 NC_005887.1 + 27970 0.76 0.087753
Target:  5'- cGCGcGCGcGCCGAGCGGCGacucgaaCAgguGCCCg -3'
miRNA:   3'- -CGC-CGCaCGGCUCGUCGC-------GUau-CGGG- -5'
28100 3' -59.7 NC_005887.1 + 6292 0.75 0.095788
Target:  5'- aCGGCGUGCgCGAGC-GCGUcgAGgCCu -3'
miRNA:   3'- cGCCGCACG-GCUCGuCGCGuaUCgGG- -5'
28100 3' -59.7 NC_005887.1 + 26209 0.75 0.101336
Target:  5'- gGCGGCGgugGCCGgccugcAGCuGGCGCAcgGGUCCg -3'
miRNA:   3'- -CGCCGCa--CGGC------UCG-UCGCGUa-UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 31129 0.75 0.101336
Target:  5'- gGCGaGCuUGCCGGGCAggccguGCGCAUAcGCCUg -3'
miRNA:   3'- -CGC-CGcACGGCUCGU------CGCGUAU-CGGG- -5'
28100 3' -59.7 NC_005887.1 + 2544 0.74 0.109921
Target:  5'- -aGGCGcUGUCGGGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- cgCCGC-ACGGCUCGUCG-------------CGUAUCGGg -5'
28100 3' -59.7 NC_005887.1 + 27866 0.74 0.119849
Target:  5'- cGCGGCGgGCaCGAuCuGCGCGaGGCCCg -3'
miRNA:   3'- -CGCCGCaCG-GCUcGuCGCGUaUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 21816 0.74 0.123226
Target:  5'- cGCGGCGcUGCCGGGC-GCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -CGCCGC-ACGGCUCGuCGCGua--------UCGGg -5'
28100 3' -59.7 NC_005887.1 + 30704 0.74 0.123226
Target:  5'- gGCGaGCagGUGCgCGAGCAGCuugucgcgcuGCGUGGCCUu -3'
miRNA:   3'- -CGC-CG--CACG-GCUCGUCG----------CGUAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 36905 0.74 0.126691
Target:  5'- uGCGGCaggaGUGCC-AGCgGGCGCGUGGUCg -3'
miRNA:   3'- -CGCCG----CACGGcUCG-UCGCGUAUCGGg -5'
28100 3' -59.7 NC_005887.1 + 41943 0.74 0.126691
Target:  5'- gGCGGCGcgGCgCGucuucGCGGCGCuu-GCCCg -3'
miRNA:   3'- -CGCCGCa-CG-GCu----CGUCGCGuauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 12556 0.73 0.137633
Target:  5'- cGUGGCGUcgacgGCCGccGGCAuGCGCAUGGUguCCg -3'
miRNA:   3'- -CGCCGCA-----CGGC--UCGU-CGCGUAUCG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.