miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28100 3' -59.7 NC_005887.1 + 3526 0.7 0.241251
Target:  5'- cGCaaCGUGCCGAuGCAGCGCcucUGGUUCg -3'
miRNA:   3'- -CGccGCACGGCU-CGUCGCGu--AUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 25521 0.72 0.17774
Target:  5'- gGUGGCGgcauaaucgucgccGCCGAGCGGUGCgcguucGUAGCUg -3'
miRNA:   3'- -CGCCGCa-------------CGGCUCGUCGCG------UAUCGGg -5'
28100 3' -59.7 NC_005887.1 + 26829 0.71 0.180625
Target:  5'- uGC-GCGUGCgCGAGCgGGCGCGUcuGCCg -3'
miRNA:   3'- -CGcCGCACG-GCUCG-UCGCGUAu-CGGg -5'
28100 3' -59.7 NC_005887.1 + 13414 0.71 0.180625
Target:  5'- gGCGGCaaGCCgcugcugacgacGAGCGGCGCAccGCUCa -3'
miRNA:   3'- -CGCCGcaCGG------------CUCGUCGCGUauCGGG- -5'
28100 3' -59.7 NC_005887.1 + 12612 0.71 0.200935
Target:  5'- uCGGCGUGCUGAcGCAGa----AGCCCg -3'
miRNA:   3'- cGCCGCACGGCU-CGUCgcguaUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 14704 0.7 0.211817
Target:  5'- cGCGGCGggcggGCCGGGCGcggcgaucGCGCA-GGCg- -3'
miRNA:   3'- -CGCCGCa----CGGCUCGU--------CGCGUaUCGgg -5'
28100 3' -59.7 NC_005887.1 + 24880 0.7 0.211817
Target:  5'- gGCGGCG-GCCGAuGCcGCGCGcucGGUCUu -3'
miRNA:   3'- -CGCCGCaCGGCU-CGuCGCGUa--UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 13113 0.7 0.22554
Target:  5'- -gGGCGUGCCGAaggucgacaccucgaGC-GUGCcgGGCCUc -3'
miRNA:   3'- cgCCGCACGGCU---------------CGuCGCGuaUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 41023 0.7 0.235103
Target:  5'- -aGGCGUcuacuggcGCCGcGCGGUGCAggucgAGCUCg -3'
miRNA:   3'- cgCCGCA--------CGGCuCGUCGCGUa----UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 41597 0.72 0.17584
Target:  5'- aGCGGCG-GCCcaggugcGGCGGCcgGCGcGGCCCg -3'
miRNA:   3'- -CGCCGCaCGGc------UCGUCG--CGUaUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 29878 0.72 0.166607
Target:  5'- uGCGGCaG-GCCGAGCguacGGCGUuucuucacGGCCCa -3'
miRNA:   3'- -CGCCG-CaCGGCUCG----UCGCGua------UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 22969 0.72 0.157811
Target:  5'- uGCGGCaGcUGCgCGAGCauGGCGCGUuGCCg -3'
miRNA:   3'- -CGCCG-C-ACG-GCUCG--UCGCGUAuCGGg -5'
28100 3' -59.7 NC_005887.1 + 31129 0.75 0.101336
Target:  5'- gGCGaGCuUGCCGGGCAggccguGCGCAUAcGCCUg -3'
miRNA:   3'- -CGC-CGcACGGCUCGU------CGCGUAU-CGGG- -5'
28100 3' -59.7 NC_005887.1 + 26209 0.75 0.101336
Target:  5'- gGCGGCGgugGCCGgccugcAGCuGGCGCAcgGGUCCg -3'
miRNA:   3'- -CGCCGCa--CGGC------UCG-UCGCGUa-UCGGG- -5'
28100 3' -59.7 NC_005887.1 + 2544 0.74 0.109921
Target:  5'- -aGGCGcUGUCGGGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- cgCCGC-ACGGCUCGUCG-------------CGUAUCGGg -5'
28100 3' -59.7 NC_005887.1 + 30704 0.74 0.123226
Target:  5'- gGCGaGCagGUGCgCGAGCAGCuugucgcgcuGCGUGGCCUu -3'
miRNA:   3'- -CGC-CG--CACG-GCUCGUCG----------CGUAUCGGG- -5'
28100 3' -59.7 NC_005887.1 + 21816 0.74 0.123226
Target:  5'- cGCGGCGcUGCCGGGC-GCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -CGCCGC-ACGGCUCGuCGCGua--------UCGGg -5'
28100 3' -59.7 NC_005887.1 + 12556 0.73 0.137633
Target:  5'- cGUGGCGUcgacgGCCGccGGCAuGCGCAUGGUguCCg -3'
miRNA:   3'- -CGCCGCA-----CGGC--UCGU-CGCGUAUCG--GG- -5'
28100 3' -59.7 NC_005887.1 + 14471 0.73 0.145404
Target:  5'- gGCGuCGUGUCGGGCcucGCGCAgaucguGCCCg -3'
miRNA:   3'- -CGCcGCACGGCUCGu--CGCGUau----CGGG- -5'
28100 3' -59.7 NC_005887.1 + 28045 0.72 0.153573
Target:  5'- uCGGCGUGaUCGAGCAgGCGCugcGCCa -3'
miRNA:   3'- cGCCGCAC-GGCUCGU-CGCGuauCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.