miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 1673 0.67 0.933705
Target:  5'- uGCGCGCGCGccaggUGCAGgauggugcggccgguGAUCGg -3'
miRNA:   3'- uCGCGCGCGCuuaa-GCGUUau-------------UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 26805 0.67 0.951075
Target:  5'- cGCGCGCGCcGAGUcgUCGCccGUGA--CGa -3'
miRNA:   3'- uCGCGCGCG-CUUA--AGCGu-UAUUuaGC- -5'
28102 3' -47.9 NC_005887.1 + 41945 0.67 0.929576
Target:  5'- cGGCGCgGCGCGucUUCGCGGc------ -3'
miRNA:   3'- -UCGCG-CGCGCuuAAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 15770 0.67 0.935426
Target:  5'- aGGcCGCGgcCGCGAAggCGCAGaagcAGAUCGa -3'
miRNA:   3'- -UC-GCGC--GCGCUUaaGCGUUa---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13823 0.67 0.946172
Target:  5'- cGGCGCGCGUGAGcgUGCc-UGAccgcAUCGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGuuAUU----UAGC- -5'
28102 3' -47.9 NC_005887.1 + 27970 0.67 0.946172
Target:  5'- cGCGCGCGCGccga-GCGGcGAcUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaagCGUUaUUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 1440 0.67 0.951075
Target:  5'- uGCGCGCGCGGuagcccUUCgGCGGcucGUCGu -3'
miRNA:   3'- uCGCGCGCGCUu-----AAG-CGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40864 0.68 0.910113
Target:  5'- cGCGcCGCGCGAGcgcCGCAcgccGUCGg -3'
miRNA:   3'- uCGC-GCGCGCUUaa-GCGUuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40925 0.68 0.923407
Target:  5'- cGCGCGCGCaccGAGUUCGgCAAc------ -3'
miRNA:   3'- uCGCGCGCG---CUUAAGC-GUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 33427 0.68 0.916919
Target:  5'- uGCGuCGCGCGGA-UCGCGAa------ -3'
miRNA:   3'- uCGC-GCGCGCUUaAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 30641 0.68 0.916919
Target:  5'- uGCGCGCgGCGAAgcgaucUUGCGAcgccuGAUCGu -3'
miRNA:   3'- uCGCGCG-CGCUUa-----AGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 29198 0.68 0.910113
Target:  5'- cGCGCGCGCGGcaa-GCGAcGAGaCGa -3'
miRNA:   3'- uCGCGCGCGCUuaagCGUUaUUUaGC- -5'
28102 3' -47.9 NC_005887.1 + 26964 0.68 0.910113
Target:  5'- -cCGCGCGCGAucagCGCGGc--GUCGa -3'
miRNA:   3'- ucGCGCGCGCUuaa-GCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 29935 0.68 0.910113
Target:  5'- cGCGCGCGCGGugUCGUugcccugcuGGUAcuGGUUGa -3'
miRNA:   3'- uCGCGCGCGCUuaAGCG---------UUAU--UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 35076 0.68 0.895557
Target:  5'- cGGCGgGCGCGAcUUCG----AAGUCGu -3'
miRNA:   3'- -UCGCgCGCGCUuAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 8094 0.68 0.902991
Target:  5'- aAGCGCGCGCGcAGcUCGCcgcgc-UCGc -3'
miRNA:   3'- -UCGCGCGCGC-UUaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 42210 0.68 0.916919
Target:  5'- uGCuGCGCGCGGuuuUUCGCAGauUAAGa-- -3'
miRNA:   3'- uCG-CGCGCGCUu--AAGCGUU--AUUUagc -5'
28102 3' -47.9 NC_005887.1 + 35677 0.68 0.922135
Target:  5'- cAGCaGCGCGCGAucggcggccggcUUCGCGGUuuccgAGAUCc -3'
miRNA:   3'- -UCG-CGCGCGCUu-----------AAGCGUUA-----UUUAGc -5'
28102 3' -47.9 NC_005887.1 + 4405 0.68 0.923407
Target:  5'- uGCGCGCcgGCGAAggCGCGGc-GAUCc -3'
miRNA:   3'- uCGCGCG--CGCUUaaGCGUUauUUAGc -5'
28102 3' -47.9 NC_005887.1 + 7447 0.68 0.923407
Target:  5'- uGGCGUGCGCG---UCGU----GAUCGg -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.