Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28102 | 3' | -47.9 | NC_005887.1 | + | 38419 | 0.66 | 0.95567 |
Target: 5'- uGCGCGcCGCGGAUguuggucuUCGCcAU--GUCGu -3' miRNA: 3'- uCGCGC-GCGCUUA--------AGCGuUAuuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 11112 | 0.66 | 0.963183 |
Target: 5'- uGGUGCGCGCGAAgcuggccgaggCGCcGUGg--CGg -3' miRNA: 3'- -UCGCGCGCGCUUaa---------GCGuUAUuuaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 34944 | 0.66 | 0.967669 |
Target: 5'- cGGCGgGUGCGAccgUgGCGAUcgucGUCGg -3' miRNA: 3'- -UCGCgCGCGCUua-AgCGUUAuu--UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 38648 | 0.66 | 0.95567 |
Target: 5'- cGGCGCGCGgcuCGAcggCGUggUAgaaGAUCGc -3' miRNA: 3'- -UCGCGCGC---GCUuaaGCGuuAU---UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 30367 | 0.66 | 0.967669 |
Target: 5'- cGUGgGCGCGAccugccGUUCGUAGacagGGAUCc -3' miRNA: 3'- uCGCgCGCGCU------UAAGCGUUa---UUUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 26435 | 0.66 | 0.963959 |
Target: 5'- cGGCcCGCGCGGAa-CGCAG---GUCGg -3' miRNA: 3'- -UCGcGCGCGCUUaaGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 35153 | 0.66 | 0.959962 |
Target: 5'- uGCGCaCGCGAgaAUUCGagaAGcGAGUCGa -3' miRNA: 3'- uCGCGcGCGCU--UAAGCg--UUaUUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 36277 | 0.66 | 0.959962 |
Target: 5'- cAGCGCGCGCaucUUCGUuGGUGAGUg- -3' miRNA: 3'- -UCGCGCGCGcuuAAGCG-UUAUUUAgc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 38152 | 0.66 | 0.958706 |
Target: 5'- uGCGCGCGCugcagcacuucggUCGCGGUcauGUCGc -3' miRNA: 3'- uCGCGCGCGcuua---------AGCGUUAuu-UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 37449 | 0.66 | 0.959962 |
Target: 5'- cGGCGCuugccuGCGCGG-UUUGCAGUGcgccggaugcGAUCa -3' miRNA: 3'- -UCGCG------CGCGCUuAAGCGUUAU----------UUAGc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 37400 | 0.67 | 0.951075 |
Target: 5'- uGGCGCuGCGCGG--UCGCGAc------ -3' miRNA: 3'- -UCGCG-CGCGCUuaAGCGUUauuuagc -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 6089 | 0.67 | 0.951075 |
Target: 5'- cGCGCGCuGCGAAgcUGUAcgAcaAAUCGu -3' miRNA: 3'- uCGCGCG-CGCUUaaGCGUuaU--UUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 40495 | 0.67 | 0.929576 |
Target: 5'- aGGCGUgGCGCGAcgUCGUGu----UCGg -3' miRNA: 3'- -UCGCG-CGCGCUuaAGCGUuauuuAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 16769 | 0.67 | 0.935426 |
Target: 5'- gGGCGCGauCGA---CGCGAUGAagGUCGg -3' miRNA: 3'- -UCGCGCgcGCUuaaGCGUUAUU--UAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 318 | 0.67 | 0.935426 |
Target: 5'- cGGUGCGCGCGuacaccgaggaAGUgCGCGAgccGUCGc -3' miRNA: 3'- -UCGCGCGCGC-----------UUAaGCGUUauuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 15770 | 0.67 | 0.935426 |
Target: 5'- aGGcCGCGgcCGCGAAggCGCAGaagcAGAUCGa -3' miRNA: 3'- -UC-GCGC--GCGCUUaaGCGUUa---UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 24895 | 0.67 | 0.940957 |
Target: 5'- cGCGCGCuCGGucuucUUCGCAGcagccGGAUCGg -3' miRNA: 3'- uCGCGCGcGCUu----AAGCGUUa----UUUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 40379 | 0.67 | 0.946173 |
Target: 5'- cGuCGCGCGCGAGgaaaUCGUGAUGcc-CGg -3' miRNA: 3'- uC-GCGCGCGCUUa---AGCGUUAUuuaGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 5919 | 0.67 | 0.940957 |
Target: 5'- aGGCGaUGCGCaAGUUCGguGU--GUCGg -3' miRNA: 3'- -UCGC-GCGCGcUUAAGCguUAuuUAGC- -5' |
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28102 | 3' | -47.9 | NC_005887.1 | + | 37113 | 0.67 | 0.940957 |
Target: 5'- cGGCGauCGCGCGGccgUCGCccgGAAUCu -3' miRNA: 3'- -UCGC--GCGCGCUua-AGCGuuaUUUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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