miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 176 1.09 0.004125
Target:  5'- cAGCGCGCGCGAAUUCGCAAUAAAUCGc -3'
miRNA:   3'- -UCGCGCGCGCUUAAGCGUUAUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 12432 0.85 0.158366
Target:  5'- cGGCGCGCGCGA--UCGCGAUGGAccCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaAGCGUUAUUUa-GC- -5'
28102 3' -47.9 NC_005887.1 + 15560 0.81 0.279655
Target:  5'- cGGCGCGCGCGAccgcgcucgAUUCGCu---GAUCGc -3'
miRNA:   3'- -UCGCGCGCGCU---------UAAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 23679 0.8 0.31972
Target:  5'- cGGCGCGCGCGAA--CGCAucgAAAUUGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 16157 0.79 0.345754
Target:  5'- cGGCGCGC-CGAGUgCGCGAgcGAUCGa -3'
miRNA:   3'- -UCGCGCGcGCUUAaGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 39106 0.78 0.422334
Target:  5'- uGCGCaGCGCGAGcggCGCGGUcGAAUCGa -3'
miRNA:   3'- uCGCG-CGCGCUUaa-GCGUUA-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 1495 0.76 0.497072
Target:  5'- cGCGCGCgGCGGcUUCGcCGGUGGAUCc -3'
miRNA:   3'- uCGCGCG-CGCUuAAGC-GUUAUUUAGc -5'
28102 3' -47.9 NC_005887.1 + 11560 0.76 0.497073
Target:  5'- cAGCGCGCgGCGG--UCGCG--GAAUCGg -3'
miRNA:   3'- -UCGCGCG-CGCUuaAGCGUuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 31511 0.76 0.497073
Target:  5'- cGCGCgGCGCGGAUgaaCGCAGUu-GUCGc -3'
miRNA:   3'- uCGCG-CGCGCUUAa--GCGUUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11746 0.75 0.577193
Target:  5'- cGCGCuGCGCGAGUugcUCGCGAUccGGcUCGa -3'
miRNA:   3'- uCGCG-CGCGCUUA---AGCGUUA--UUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 13445 0.74 0.636151
Target:  5'- gGGCGCGCGCauccAAUUCGUAGcc-GUCGa -3'
miRNA:   3'- -UCGCGCGCGc---UUAAGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 5502 0.74 0.636151
Target:  5'- cGCGCGuCGCGAuccagCGCAAggcuGUCGa -3'
miRNA:   3'- uCGCGC-GCGCUuaa--GCGUUauu-UAGC- -5'
28102 3' -47.9 NC_005887.1 + 29659 0.73 0.647978
Target:  5'- uGCGCGCGUGAcccugcaaCGCGAUAAgcuucGUCGg -3'
miRNA:   3'- uCGCGCGCGCUuaa-----GCGUUAUU-----UAGC- -5'
28102 3' -47.9 NC_005887.1 + 42253 0.71 0.7631
Target:  5'- cGCGgGCGUGGAUUUGCAG-GAAUUu -3'
miRNA:   3'- uCGCgCGCGCUUAAGCGUUaUUUAGc -5'
28102 3' -47.9 NC_005887.1 + 28236 0.71 0.773992
Target:  5'- cAGCGCGCGCagcUUCGCGAg----CGg -3'
miRNA:   3'- -UCGCGCGCGcuuAAGCGUUauuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 14719 0.71 0.773992
Target:  5'- gGGCGCG-GCGAucgCGCAGgcgacGAUCGa -3'
miRNA:   3'- -UCGCGCgCGCUuaaGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 36919 0.71 0.784714
Target:  5'- cAGCGgGCGCGuggUCGCGcc-GGUCGc -3'
miRNA:   3'- -UCGCgCGCGCuuaAGCGUuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 9393 0.71 0.795254
Target:  5'- cGCGcCGCGCGAgaacguAUUCGCGc--GGUCGu -3'
miRNA:   3'- uCGC-GCGCGCU------UAAGCGUuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13667 0.7 0.805596
Target:  5'- cGCGgGCGUGA--UCGCGGguuGUCGu -3'
miRNA:   3'- uCGCgCGCGCUuaAGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 27429 0.7 0.815729
Target:  5'- cGGCGUGCGuCGA--UCGCGAguGAUUGc -3'
miRNA:   3'- -UCGCGCGC-GCUuaAGCGUUauUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.