miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 40925 0.68 0.923407
Target:  5'- cGCGCGCGCaccGAGUUCGgCAAc------ -3'
miRNA:   3'- uCGCGCGCG---CUUAAGC-GUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 40690 0.69 0.853912
Target:  5'- uGGCGCGCGCGcacggcUgGCAGgagccGAUCGa -3'
miRNA:   3'- -UCGCGCGCGCuua---AgCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11735 0.69 0.871437
Target:  5'- cGGCGCGCaCGAAUgcaCGCAAcagcauGAUCa -3'
miRNA:   3'- -UCGCGCGcGCUUAa--GCGUUau----UUAGc -5'
28102 3' -47.9 NC_005887.1 + 35076 0.68 0.895557
Target:  5'- cGGCGgGCGCGAcUUCG----AAGUCGu -3'
miRNA:   3'- -UCGCgCGCGCUuAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 8094 0.68 0.902991
Target:  5'- aAGCGCGCGCGcAGcUCGCcgcgc-UCGc -3'
miRNA:   3'- -UCGCGCGCGC-UUaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 42210 0.68 0.916919
Target:  5'- uGCuGCGCGCGGuuuUUCGCAGauUAAGa-- -3'
miRNA:   3'- uCG-CGCGCGCUu--AAGCGUU--AUUUagc -5'
28102 3' -47.9 NC_005887.1 + 35677 0.68 0.922135
Target:  5'- cAGCaGCGCGCGAucggcggccggcUUCGCGGUuuccgAGAUCc -3'
miRNA:   3'- -UCG-CGCGCGCUu-----------AAGCGUUA-----UUUAGc -5'
28102 3' -47.9 NC_005887.1 + 4405 0.68 0.923407
Target:  5'- uGCGCGCcgGCGAAggCGCGGc-GAUCc -3'
miRNA:   3'- uCGCGCG--CGCUUaaGCGUUauUUAGc -5'
28102 3' -47.9 NC_005887.1 + 7447 0.68 0.923407
Target:  5'- uGGCGUGCGCG---UCGU----GAUCGg -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 20784 0.69 0.853912
Target:  5'- cGUG-GCGCaAAUUCGCAGUuugGAAUCGc -3'
miRNA:   3'- uCGCgCGCGcUUAAGCGUUA---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13167 0.7 0.844742
Target:  5'- cGCGCGCGCGcagacagCGgGAgcGGUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaa---GCgUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 2263 0.7 0.844742
Target:  5'- gGGCGCGCGUaAGUUCG----GGAUCGa -3'
miRNA:   3'- -UCGCGCGCGcUUAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 15560 0.81 0.279655
Target:  5'- cGGCGCGCGCGAccgcgcucgAUUCGCu---GAUCGc -3'
miRNA:   3'- -UCGCGCGCGCU---------UAAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 23679 0.8 0.31972
Target:  5'- cGGCGCGCGCGAA--CGCAucgAAAUUGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 16157 0.79 0.345754
Target:  5'- cGGCGCGC-CGAGUgCGCGAgcGAUCGa -3'
miRNA:   3'- -UCGCGCGcGCUUAaGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11560 0.76 0.497073
Target:  5'- cAGCGCGCgGCGG--UCGCG--GAAUCGg -3'
miRNA:   3'- -UCGCGCG-CGCUuaAGCGUuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 31511 0.76 0.497073
Target:  5'- cGCGCgGCGCGGAUgaaCGCAGUu-GUCGc -3'
miRNA:   3'- uCGCG-CGCGCUUAa--GCGUUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 42253 0.71 0.7631
Target:  5'- cGCGgGCGUGGAUUUGCAG-GAAUUu -3'
miRNA:   3'- uCGCgCGCGCUUAAGCGUUaUUUAGc -5'
28102 3' -47.9 NC_005887.1 + 14719 0.71 0.773992
Target:  5'- gGGCGCG-GCGAucgCGCAGgcgacGAUCGa -3'
miRNA:   3'- -UCGCGCgCGCUuaaGCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 28236 0.71 0.773992
Target:  5'- cAGCGCGCGCagcUUCGCGAg----CGg -3'
miRNA:   3'- -UCGCGCGCGcuuAAGCGUUauuuaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.