miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 176 1.09 0.004125
Target:  5'- cAGCGCGCGCGAAUUCGCAAUAAAUCGc -3'
miRNA:   3'- -UCGCGCGCGCUUAAGCGUUAUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 318 0.67 0.935426
Target:  5'- cGGUGCGCGCGuacaccgaggaAGUgCGCGAgccGUCGc -3'
miRNA:   3'- -UCGCGCGCGC-----------UUAaGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 1440 0.67 0.951075
Target:  5'- uGCGCGCGCGGuagcccUUCgGCGGcucGUCGu -3'
miRNA:   3'- uCGCGCGCGCUu-----AAG-CGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 1495 0.76 0.497072
Target:  5'- cGCGCGCgGCGGcUUCGcCGGUGGAUCc -3'
miRNA:   3'- uCGCGCG-CGCUuAAGC-GUUAUUUAGc -5'
28102 3' -47.9 NC_005887.1 + 1673 0.67 0.933705
Target:  5'- uGCGCGCGCGccaggUGCAGgauggugcggccgguGAUCGg -3'
miRNA:   3'- uCGCGCGCGCuuaa-GCGUUau-------------UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 2263 0.7 0.844742
Target:  5'- gGGCGCGCGUaAGUUCG----GGAUCGa -3'
miRNA:   3'- -UCGCGCGCGcUUAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 4405 0.68 0.923407
Target:  5'- uGCGCGCcgGCGAAggCGCGGc-GAUCc -3'
miRNA:   3'- uCGCGCG--CGCUUaaGCGUUauUUAGc -5'
28102 3' -47.9 NC_005887.1 + 5502 0.74 0.636151
Target:  5'- cGCGCGuCGCGAuccagCGCAAggcuGUCGa -3'
miRNA:   3'- uCGCGC-GCGCUuaa--GCGUUauu-UAGC- -5'
28102 3' -47.9 NC_005887.1 + 5919 0.67 0.940957
Target:  5'- aGGCGaUGCGCaAGUUCGguGU--GUCGg -3'
miRNA:   3'- -UCGC-GCGCGcUUAAGCguUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 6089 0.67 0.951075
Target:  5'- cGCGCGCuGCGAAgcUGUAcgAcaAAUCGu -3'
miRNA:   3'- uCGCGCG-CGCUUaaGCGUuaU--UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 6293 0.69 0.871437
Target:  5'- cGGCGUGCGCGAg--CGC-----GUCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaaGCGuuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 6475 0.68 0.910113
Target:  5'- -aCGgGCGCGGcgUCGCGGU--GUCu -3'
miRNA:   3'- ucGCgCGCGCUuaAGCGUUAuuUAGc -5'
28102 3' -47.9 NC_005887.1 + 7447 0.68 0.923407
Target:  5'- uGGCGUGCGCG---UCGU----GAUCGg -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 8094 0.68 0.902991
Target:  5'- aAGCGCGCGCGcAGcUCGCcgcgc-UCGc -3'
miRNA:   3'- -UCGCGCGCGC-UUaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 9393 0.71 0.795254
Target:  5'- cGCGcCGCGCGAgaacguAUUCGCGc--GGUCGu -3'
miRNA:   3'- uCGC-GCGCGCU------UAAGCGUuauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11112 0.66 0.963183
Target:  5'- uGGUGCGCGCGAAgcuggccgaggCGCcGUGg--CGg -3'
miRNA:   3'- -UCGCGCGCGCUUaa---------GCGuUAUuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 11560 0.76 0.497073
Target:  5'- cAGCGCGCgGCGG--UCGCG--GAAUCGg -3'
miRNA:   3'- -UCGCGCG-CGCUuaAGCGUuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11735 0.69 0.871437
Target:  5'- cGGCGCGCaCGAAUgcaCGCAAcagcauGAUCa -3'
miRNA:   3'- -UCGCGCGcGCUUAa--GCGUUau----UUAGc -5'
28102 3' -47.9 NC_005887.1 + 11746 0.75 0.577193
Target:  5'- cGCGCuGCGCGAGUugcUCGCGAUccGGcUCGa -3'
miRNA:   3'- uCGCG-CGCGCUUA---AGCGUUA--UUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 12432 0.85 0.158366
Target:  5'- cGGCGCGCGCGA--UCGCGAUGGAccCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaAGCGUUAUUUa-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.